Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1247 ATGGGTTCCATCAGTTTTTTAGCTCTTTCCCTTTTGGGGTCGATATCCATTCTTCTTCAGAATTGCATTGCGCTTAACAATGGAGGAGGAGGAGTTGGAGGAGGAGGAGGAGTTTCCCCCCAACTCAACGACGATATTCTCGGCTTAATCGTCTTCAAATCCGACCTGCACGACCCATCTTCCTCTCTCTCCTCCTGGAATGAAGACGATGATTCCCCCTGTTCTTGGGATTTCATCAAATGCAACCCCATTAATCGCAGAGTTTCTGAAATTTCCCTCGATGGGTTGGCCTTAACTGGCAAAATCGGAAGAGGGCTTCAGAAATTGCAGCATCTCAAGGTATTGTCCCTCTCTAACAATAATTTTACTGCCAATGTTAATCCTCAGCTCGTTCTTCCTCCATCTCTCGAACGACTTAATTTCAGTCGTAATACTCTCTCTGGACGAATACCCACTTCTCTATTTTCTATGTCGTCTGTTAGATTTCTTGATTTTTCTCATAATTTGTTATCTGGGCCTCTTCCTGATGATATGTTTCTCAATTGCTCTTCGCTTCATTACCTTTCTCTTGCGTCTAATTTGCTTGAAGGCCCTGTCCCCAACACCTTGCCCACCAGGTGTTTGTATTTAAACACTTTGAATCTTTCGAGTAATAAATTCTCTGGTAGCTTGGATTTTGCTTCTGGGATTTGGTCTTTGACAAGGCTGAGAACATTGGATCTCTCAAACAATGCTCTCTCTGGTGTTTTCCCACAAGGGATTTCATCCATTCATAACCTCAAAGAGCTGAAGTTACAAAGCAACCAATTCACAGGCTCATTACCTACAGATTTAGGATTATGCCTCCACTTATCTACACTAGACGTCAGCCGAAACCGCCTCACCGGGCCGCTACCGGAGTCGATGAAACTCTTGACTTCATTAACCCTCTTCAACATAGGACACAACACTTTCTCAGGGGAGTTCCCAGAGTGGATTGGGAAGATGACAAGTTTGGAGTATGTGGATTTCTCAAGCAATGGCTTCACTGGGAGCCTCCCCTTGACAATGGGTGGATTGAGATCTATCAAACACATGAGTTTTTCAAACAACAAGCTGTCTGGGAACATCCCTGAGACATTGAAGGACTGTTCTGAGCTGACTGTGATTAACCTTGAAGGAAACAGCTTGAATGGAAGAATGCCAGAAGGGTTGTTTGAATTGGGTTTGGAGGAGATTGATTTGTCTGAGAATGAGCTGATTGGTTCAATTCCAATAGGATCAAGCAGGCTGTATGAGAAACTAACAAGAATGGATCTGTCAAGGAACAGATTGGAAGGGAATTTTCCAGCAGAAATGGGATTGTATAGAAATTTGAGGTATTTGAATCTGTCATGGAACAACTTGAAGGCAAAGATTCCACCAGAAATTGGGATGTTTCAGAATTTGAGTGTGTTGGACTTGAGAAGCAGTGATCTGCAAGGTTCAATCCCTGGAGAGTTGTGTGATTCTGGGAGTTTGGGGATACTTCAGCTTGATGGCAACTCCTTGATTGGTTCAATTCCTGATGACATTGGAAACTGTCTCTCACTTTACTTGCTGAGTTTGTCCCACAACAATCTAAGTGGACCAATTCCAAAGTCAATCTCAAAGCTAAGCAAGCTAGAGATTTTAAGATTAGAATCAAATGAACTGAGTGGAGAAATACCCCAAGATCTTGGAATTCTTCAAAACCTTCTTGCTGTTAACATTTCATACAATATGCTCACAGGCAGGCTTCCTGTTAGTGGCATTTTTCCAAGCTTGGATCAAAGTGCTTTGCAAGGAAACTTAGGCCTTTGCTCCCCTTTGCTTAAAGGACCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCTTATCCCACCAACCAAATGGGTGGCCAAAGCACCAGAAATAAGCCTTCACAACACTCTAATTCTTCCCATCATGTGTTCTTCAGTATATCTGCCATTGTTGCCATTTCTGCTGCCACTTTGATTGCCATTGGAGTGCTTGTGATTACCTTGCTGAATGTCTCTGCTCGTAGGAGATCGCTTGCATTTGTCGATAATACCTTGGAGAGCATGTGCTCAAGCTCTTCGAAATCGGGGACTGCGACTGCCGGTAAGCTTATTTTGTTTGATTCGAACTCGAGGGCCTCGCCGAATTGGGTTAGTAACCATGAAGCCTTGCTGAACAAGGCCTCTGAGATTGGTGCTGGAGTTTTCGGAACGGTTTATAAGGTTTCGTTGGGAGATCAAGGAGGGAGAGATGTGGCTATCAAGAAGCTTGTGAAATCGAACATGATTCAAAATCCGGAAGATTTCGATCGCGAAATACGAATCTTGGGAAAGGTGAAGCACCCGAATTTGATCGGCTTAAAGGGTTACTACTGGACTGCTCAAACTCAGCTGTTGCTGATGGAGTATGCTACCAATGGAAGTCTTCAAACTCAACTACATGGAAGGCTTCCTTCAACTCCATCACTCTCTTGGGCAAACAGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTAGCACATTTACACCACTCGTTCCGCCCGCCAATCGTTCACTACAATCTCAAGCCAAGCAACATCTTGCTCGACGAAAACTTCAACCCGAAGATCTCCGATTACGGACTGGCAAGACTGCTAACAAAGCTCGACAAGCACGTCGTGAACAACAGATTCCAAAGTGCATTGGGGTACATCGCACCAGAACTGGCATGCCAAAGTATAAGAGTGAACGAGAAATGCGACGTACACGGGTTCGGGGTGATGATTCTGGAGATCGTGACAGGACGAAGGCCGGTGGAGTATGGAGAAGACAATGTGGTTATATTAACCGACCATGTGAGATACTTGCTCGAGAGGGGGAACGTGTTGGATTGTGTTGATCCAAGCATGAGTGAATATTCAGAAGATGAAGTGGTGCCAATTCTGAAACTGGCATTGGTATGCACTTCTCAAATTCCTTCGAGTAGGCCTTCAATGGCGGAAGTGGTGCAGATTCTGCAAGTTATAAAGGCTCCAGTTCCACAAAGAATAGAAGCATTTTGA 3072 44.34 MGSISFLALSLLGSISILLQNCIALNNGGGGVGGGGGVSPQLNDDILGLIVFKSDLHDPSSSLSSWNEDDDSPCSWDFIKCNPINRRVSEISLDGLALTGKIGRGLQKLQHLKVLSLSNNNFTANVNPQLVLPPSLERLNFSRNTLSGRIPTSLFSMSSVRFLDFSHNLLSGPLPDDMFLNCSSLHYLSLASNLLEGPVPNTLPTRCLYLNTLNLSSNKFSGSLDFASGIWSLTRLRTLDLSNNALSGVFPQGISSIHNLKELKLQSNQFTGSLPTDLGLCLHLSTLDVSRNRLTGPLPESMKLLTSLTLFNIGHNTFSGEFPEWIGKMTSLEYVDFSSNGFTGSLPLTMGGLRSIKHMSFSNNKLSGNIPETLKDCSELTVINLEGNSLNGRMPEGLFELGLEEIDLSENELIGSIPIGSSRLYEKLTRMDLSRNRLEGNFPAEMGLYRNLRYLNLSWNNLKAKIPPEIGMFQNLSVLDLRSSDLQGSIPGELCDSGSLGILQLDGNSLIGSIPDDIGNCLSLYLLSLSHNNLSGPIPKSISKLSKLEILRLESNELSGEIPQDLGILQNLLAVNISYNMLTGRLPVSGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPTNQMGGQSTRNKPSQHSNSSHHVFFSISAIVAISAATLIAIGVLVITLLNVSARRRSLAFVDNTLESMCSSSSKSGTATAGKLILFDSNSRASPNWVSNHEALLNKASEIGAGVFGTVYKVSLGDQGGRDVAIKKLVKSNMIQNPEDFDREIRILGKVKHPNLIGLKGYYWTAQTQLLLMEYATNGSLQTQLHGRLPSTPSLSWANRFKIVLGTAKGLAHLHHSFRPPIVHYNLKPSNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYIAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMSEYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPVPQRIEAF 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59476002 59480261 - Hsped.05g12470.1 Hepe05g1247 570512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1247 1023 Pfam Leucine Rich Repeat 135 156 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 283 303 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 451 471 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 331 353 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 355 377 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 259 279 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Pfam Leucine Rich Repeat 235 256 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 Gene3D Ribonuclease Inhibitor 403 614 IPR032675 -
Hepe05g1247 1023 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Hepe05g1247 1023 Gene3D Ribonuclease Inhibitor 301 401 IPR032675 -
Hepe05g1247 1023 Gene3D Phosphorylase Kinase; domain 1 722 813 - -
Hepe05g1247 1023 Gene3D Ribonuclease Inhibitor 43 205 IPR032675 -
Hepe05g1247 1023 SUPERFAMILY Protein kinase-like (PK-like) 738 1013 IPR011009 -
Hepe05g1247 1023 FunFam Leucine-rich repeat receptor-like protein kinase 42 201 - -
Hepe05g1247 1023 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 814 1018 - -
Hepe05g1247 1023 FunFam Inactive leucine-rich repeat receptor-like protein kinase 328 618 - -
Hepe05g1247 1023 MobiDBLite consensus disorder prediction 631 648 - -
Hepe05g1247 1023 ProSiteProfiles Leucine-rich repeat profile. 451 473 IPR001611 GO:0005515(InterPro)
Hepe05g1247 1023 ProSitePatterns Protein kinases ATP-binding region signature. 741 766 IPR017441 GO:0005524(InterPro)
Hepe05g1247 1023 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 729 813 - -
Hepe05g1247 1023 SUPERFAMILY L domain-like 58 395 - -
Hepe05g1247 1023 ProSiteProfiles Protein kinase domain profile. 735 1012 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1247 1023 MobiDBLite consensus disorder prediction 628 648 - -
Hepe05g1247 1023 PANTHER OS04G0122200 PROTEIN 61 175 IPR051809 -
Hepe05g1247 1023 SUPERFAMILY L domain-like 327 597 - -
Hepe05g1247 1023 Gene3D Ribonuclease Inhibitor 206 300 IPR032675 -
Hepe05g1247 1023 Gene3D Transferase(Phosphotransferase) domain 1 814 1019 - -
Hepe05g1247 1023 CDD STKc_IRAK 741 1010 - -
Hepe05g1247 1023 Pfam Protein kinase domain 737 1007 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1247 1023 SMART LRR_typ_2 157 181 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 545 569 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 109 139 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 233 256 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 377 401 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 257 281 IPR003591 -
Hepe05g1247 1023 SMART LRR_typ_2 449 473 IPR003591 -
Hepe05g1247 1023 FunFam Inactive leucine-rich repeat receptor-like protein kinase 226 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0019 Hepe-Chr5:232394 Hepe05g1247 Hepe-Chr5:59476002 1.90e-102 dispersed
Hepe05g1247 Hepe-Chr5:59476002 Hepe06g1185 Hepe-Chr6:61349035 1.22e-88 dispersed
Hepe05g1247 Hepe-Chr5:59476002 Hepe02g3275 Hepe-Chr2:82360636 8.21e-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72822 PF00069 Pkinase 4.30E-42 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1247 - - - 0.0