Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1249 ATGGCTTTATCTTCTCATTTCTCGACCCCTAGGGACTGGCATGTAACATCTCTTAGTTCAAACCTCCTCCGCGGCAGTCCATTGTGGTTGCATTCCAATGTTGGTTGCAAGTACCAGAGAAAAGAAAATTTCAAGACTCGTTATACTTTAACTCCTTGTTCCTCTCTCAAGATTGTCCGTAGTCGTCCGCTAGATCAGCATGCTGTAAAACATAACCAAACTCGATTTGTGCAAAAGCTGATAATACTACTGCTATCTAAACCAAAGCATTTTCTTCCACTCCACATTCTTTCCAAGTGTCGTGGCTATCTTTCCCCTCCCAAACCTCGTACCCTCCTTTCAATGATTCATCGTTATCCTTCCATTTTTGAACTTTTTTCAATCCCTTATCCACCCATACCACTCAATGCAACAAAGCTATATCCCCAACTTTGTGTTCGTCTAACCCCAGCAGCAGCATCTCTTGCTAAACAGGACTCCAATCTCAAATTGGCAATCTCTAACACCTTGGCTGAAAAGCTCCAAAAATTACTTATGCTTTCTTCACACCACAGGATTCTCTTATCAAAGCTGGTTCACCTTGCTCCTGATCTAAGCATGCCCCCAAATTTTAGGTCCCGTCTCTGTAATGATTATCCAGATAAATTCAGGACTGTTGATACTTCATATGGCCGTGCACTGGAGCTTGTCTCCTGGGACCCAGAGTTGGCAAAGCCTTTACCTTGCCTTCAAGTTCCTTCACGTGAGCTAATAGTGGATAGGCCATTAAAATTCAACTTGTTGAGACTAAGAAAGGGGCTGAATTTGAAAAGATCCCACCAGGAATTTCTAATTAAGTTCAGGGATTTGCCTGATGTTTGCCCTTACAAAACTCCTGCAAGTGAATTGGTTAAGGAGTCTCTTGAGTCAGAGAAACGAGCTTGTGCTGTGGTGCGAGAGGTATTGGGGATGATGATTGAGAAGAGGACTTTAATAGACCACTTGACACATTTCAGAAAAGATTTTGGGCTTTCCAATAAACTGAGAGGGATGATTGTGAGGCATCCAGAGTTATTTTATGTGAGTCTTAAGGGTCAGAGAGACTCTGTATTCCTTGTGGAGGGGTTTGATGATAAGGGTGTTCTAATGGAGAAGGATGAGACTTTGGCAATCAAAAATCAATGGATGAAGCTTTTAATGGAAGGGAAAAGGATGAGACGGGAGAAGAGGAAGGCTCAATTATATGACAGTAAATATGGAAATGAAAATGATAATCATGATCATGAGATGGAAACTGACTATGATGATGATTACGACGATGGTTTTGAGAGTTTATTTCAGTATGAGGATATAGATTTTGAGGATGAGATGAGTGACCTGCCAAGCAATAGGTTGAATGGAGACTTTTGGACTACAAATAATGCAGATATTATTAATGTCGCAGATGGAGGACATATAGAACCTTGGTGA 1449 41.27 MALSSHFSTPRDWHVTSLSSNLLRGSPLWLHSNVGCKYQRKENFKTRYTLTPCSSLKIVRSRPLDQHAVKHNQTRFVQKLIILLLSKPKHFLPLHILSKCRGYLSPPKPRTLLSMIHRYPSIFELFSIPYPPIPLNATKLYPQLCVRLTPAAASLAKQDSNLKLAISNTLAEKLQKLLMLSSHHRILLSKLVHLAPDLSMPPNFRSRLCNDYPDKFRTVDTSYGRALELVSWDPELAKPLPCLQVPSRELIVDRPLKFNLLRLRKGLNLKRSHQEFLIKFRDLPDVCPYKTPASELVKESLESEKRACAVVREVLGMMIEKRTLIDHLTHFRKDFGLSNKLRGMIVRHPELFYVSLKGQRDSVFLVEGFDDKGVLMEKDETLAIKNQWMKLLMEGKRMRREKRKAQLYDSKYGNENDNHDHEMETDYDDDYDDGFESLFQYEDIDFEDEMSDLPSNRLNGDFWTTNNADIINVADGGHIEPW 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59513565 59516971 - Hsped.05g12490.1 Hepe05g1249 570514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1249 482 Pfam Plant organelle RNA recognition domain 59 396 IPR021099 GO:0003723(InterPro)
Hepe05g1249 482 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 45 436 IPR045040 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1249 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1249 Hepe-Chr5:59513565 Hepe03g0870 Hepe-Chr3:30361328 3.23e-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 2 3 1 32