Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1252 ATGGCTGAATTCCTGTGGACTTTTGCTGTGCAAGAAGTATTGAAGAAGGTTGTGAAAGTTGCAGCTGAGCAAATTGGTGTGGCTTGGGGCTTGGAGAAGGAGCTCTCCAATTTGACCAACTGGCTACTCAAAGCTGAAGCTATTTTAAGAGATATTAACAGAAAAAAGACATACCATGAATCTGTGAGGATGTGGGTTGAGGATCTTCAACATGTTGTTTACGAAGCCGACGATCTATTGGACGAGCTTGTTTACGAAGATCTTCGACAAAAAGTGGAAACAGAGGAAACAAAAGACAAGGTGTGCAATTTCTTTTCACTATCTAATTATAATCCTTTTCTGTTTCGTTCCAACATGGCCAACAAATTGAAGAACATTACACAAACTTTATGTCAACATTACCATGAGGCAAGTTCTTTAGGTGTGGTTGGTCTTGTTGGGGAGGAATCCACAGAAACAAATAAGAACATTGATCTTAAGCAGATTCGAGAGACGACATCGAATCGTAATGTCGAAGTTATAGGAAGGGAAGTTGAAGTTTCAAACATAGTGAAGCTTGTGATTGAATCTAGCAATGAACATCCTATGTCGATCATTCCCATTGTCGGTATGGGTGGACTTGGGAAAACAACGTTGGCAAGGAAGATCTTCAATCATGAGTTGATTAAAAGACATTTTGATAAAACTATATGGGTTTGTGTCTCTCAACCATTTATGATCATAAATATTTTGGAAGGGATCTTTGAGAGTCTCACAAAAACTTCAAGTGGCTTGAACAAGGAGACCTTACTTCAAAGCCTCCAAGACCAGATGCAAGATAAAAATTATTTTCTTGTTCTTGACGACGTCTCGAATGAAGAAACGAGCTTGTGGGACGAGTTAAAGTATTGTTTAAAAGAGATTGCTGGAAAATCTGGAAATCGTATTATTGTTACCACAAGGAGTGCAAAAGTTGGAACTATGATGGAGACAATTTCAAGTCATCATCTTGAAAAATTGTCTGATGATCAATGTTGGTTCTTGTTCAAAGAGAGTGCAAATGTAAATCATGTAAATCAAGAATTGGAGATGATTAGAGAAGAGGTGGTTAAAAACATTGGTGGAGTGCCACTAGTTGCAAAAGTTTTAGGAGGGGCAGTAAAGTTTGAAGGAGACTACGAGAAATGGACGAAAAATTTCGAAAGCATAGTGAAACATATATCAAAAGACGACAAAGATTTTGTTTCATCCATACTTAAATTAAGTGTGGATTGTCTGCCACTCCTTTCATTAAAGCAATGTTTTGCTTATTGTTCAAACTTTCCGAAAGGTTATTTATTCGACAAAGAAAGCTTAATTCAAATGTGGATAGCACAAGGATTTGTTCAACCACAAGAAGGAGATGATGAAATGATGCTTGAGGATATAGGAGAAGGATACTTCAACTTCCTATTATCCCGCTCCTTATTTGAAGTTGTGGATCATAATAGTGAAAGTATTACTAATGACTTTACGATGCATGATCTAATACATGATATCGCTTGTGATATTTCGAATCATCAAATGGTGGAACCAAACCTTAGTCTTTCTGGTGGAAAAAGTACGAGAAAGTTACGCACATTAATTTGCAATAAGAAGATTGATCAGGATTGTTTTTGCTTGCGTGTTTTAGCAACGAATTCAATGTATATTGTAAACTTATCAGATTCAATTGGTATGTTGAAGCATTTGAGGTATCTTGACATACTAGGGTTTCTAAATTTGAAGGATCGAGAATCTATTGCTATGCTTTATAATTTGCAAACGTTGAAGCTTGGAAAAGGAATACCACTTCCAAAGAATTTGAGAAAATTGGTGAGATTAAGACATTTACAATTTGACTACAACATCTCCAATAAAATGCCTTTACATATGAGCCAATTGATTCATCTTCAAACATTATGTGCATTTGAAGTAGAGAATGAGGAGGGTGGTAAAATTGAAGAACTTGGACCTTTAAAAAATTTGAAAGGGTCATTAAAACTTTCAAATCTTAGAGCAGTGAAGAGTAAAGAGGAAGCTATAAGTGCAAGGTTGATGGAAAAGAAGAATTTAAGTAACCTAGACTTGGATTGGAACTATTACTTTGGAGAAGAAGATAAGAACTACAATGGCTTGGAAGTGTTGAAAGGACTTCAACCACATCACAATCTTCAATCATTATCTATTACTTGCTATAATGGGCAACTTTTTCCTAATAGCATTTTTGGTGAAAAGTTGGTTAAAATACTTCTTAGAACTTGTGAAAAATGTGAAATTCTTCCAATGCTAGGACAATTACCAAAGTTGGAGGTACTTGACATTTCTTATATGGATAGTGTGAGAAGTATAGGAAGGGAATTCTATGTAGATAACTCCAACCAAAGGGTTTCTTTTCCCAAGTTGAAGGAATTTTTCTTATGTTCTTTGCAAAACCTAAAGCATTGGGAAGACTTCTCAAATGGTATTGCTTTTCCACTTCTTGAAATATTATCTTTGAGGGATTGTCCCAAATTAATAAGTGTTCCGGATTGCTTCGTATCTCTTCAAACCCTAACCGTTAAGGGATGTAGAGAATTGTCGAAACTACCAAATCTGCAGCTAGAATTTTGCAATTCCATCAAGTCTTTGACGATTTCTTATTGTCCTAGATTTGATCCCTGGAATAATATGCGTAATCGGTATAATTTGGAACACGTGAAAATTATTGGATGTATGGAAGATTACGAGTGTTTGATGAACGCATCAGAGCTTCCTCAACAACTCGGGCATATCACAACTTTGAAAGCTTTAACTATTAAGAATTTTAATAATATGGAAGCTTTACCAGATTGGTTGGGAAAGCTTACATGTTTAGAAACATTGAGTCTTTCTTCTTGCTACAATTTGGAACGGTTGGCTTCAAAAGAAGCCATGCTATGCCTCAAGAAATTGAAGCATTTGTATGTTCGAGGATGTCGAATGCTACTACTTGACCAAGATGATCCAGAGGAGATGGCCAAACTTTCCCATCTTCCCATCAATAGTGATGATGTAAGGTTTTAA 3042 36.03 MAEFLWTFAVQEVLKKVVKVAAEQIGVAWGLEKELSNLTNWLLKAEAILRDINRKKTYHESVRMWVEDLQHVVYEADDLLDELVYEDLRQKVETEETKDKVCNFFSLSNYNPFLFRSNMANKLKNITQTLCQHYHEASSLGVVGLVGEESTETNKNIDLKQIRETTSNRNVEVIGREVEVSNIVKLVIESSNEHPMSIIPIVGMGGLGKTTLARKIFNHELIKRHFDKTIWVCVSQPFMIINILEGIFESLTKTSSGLNKETLLQSLQDQMQDKNYFLVLDDVSNEETSLWDELKYCLKEIAGKSGNRIIVTTRSAKVGTMMETISSHHLEKLSDDQCWFLFKESANVNHVNQELEMIREEVVKNIGGVPLVAKVLGGAVKFEGDYEKWTKNFESIVKHISKDDKDFVSSILKLSVDCLPLLSLKQCFAYCSNFPKGYLFDKESLIQMWIAQGFVQPQEGDDEMMLEDIGEGYFNFLLSRSLFEVVDHNSESITNDFTMHDLIHDIACDISNHQMVEPNLSLSGGKSTRKLRTLICNKKIDQDCFCLRVLATNSMYIVNLSDSIGMLKHLRYLDILGFLNLKDRESIAMLYNLQTLKLGKGIPLPKNLRKLVRLRHLQFDYNISNKMPLHMSQLIHLQTLCAFEVENEEGGKIEELGPLKNLKGSLKLSNLRAVKSKEEAISARLMEKKNLSNLDLDWNYYFGEEDKNYNGLEVLKGLQPHHNLQSLSITCYNGQLFPNSIFGEKLVKILLRTCEKCEILPMLGQLPKLEVLDISYMDSVRSIGREFYVDNSNQRVSFPKLKEFFLCSLQNLKHWEDFSNGIAFPLLEILSLRDCPKLISVPDCFVSLQTLTVKGCRELSKLPNLQLEFCNSIKSLTISYCPRFDPWNNMRNRYNLEHVKIIGCMEDYECLMNASELPQQLGHITTLKALTIKNFNNMEALPDWLGKLTCLETLSLSSCYNLERLASKEAMLCLKKLKHLYVRGCRMLLLDQDDPEEMAKLSHLPINSDDVRF 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59559477 59562518 + Hsped.05g12520.1 Hepe05g1252 570517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1252 1013 Gene3D - 332 415 IPR042197 -
Hepe05g1252 1013 PRINTS Disease resistance protein signature 366 380 - -
Hepe05g1252 1013 PRINTS Disease resistance protein signature 270 284 - -
Hepe05g1252 1013 PRINTS Disease resistance protein signature 198 213 - -
Hepe05g1252 1013 PRINTS Disease resistance protein signature 946 962 - -
Hepe05g1252 1013 PANTHER DISEASE RESISTANCE PROTEIN RP 32 881 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Hepe05g1252 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 431 IPR027417 -
Hepe05g1252 1013 Gene3D Ribonuclease Inhibitor 508 652 IPR032675 -
Hepe05g1252 1013 Pfam Rx N-terminal domain 9 96 IPR041118 -
Hepe05g1252 1013 Gene3D - 416 507 IPR036388 -
Hepe05g1252 1013 Gene3D - 8 122 - -
Hepe05g1252 1013 Gene3D Ribonuclease Inhibitor 653 847 IPR032675 -
Hepe05g1252 1013 Gene3D Ribonuclease Inhibitor 848 1006 IPR032675 -
Hepe05g1252 1013 Pfam NB-ARC domain 182 417 IPR002182 GO:0043531(InterPro)
Hepe05g1252 1013 Gene3D - 153 328 IPR027417 -
Hepe05g1252 1013 FunFam Probable disease resistance protein At1g61300 155 326 - -
Hepe05g1252 1013 FunFam Probable disease resistance protein At1g63360 417 509 - -
Hepe05g1252 1013 SUPERFAMILY L domain-like 499 905 - -
Hepe05g1252 1013 SUPERFAMILY RNI-like 893 994 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1252 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1252 Hepe-Chr5:59559477 Hepe08g1123 Hepe-Chr8:11218313 1.60e-318 dispersed
Hepe05g1251 Hepe-Chr5:59537687 Hepe05g1252 Hepe-Chr5:59559477 6.13e-273 tandem
Hepe05g1252 Hepe-Chr5:59559477 Hepe05g1253 Hepe-Chr5:59652762 5.00e-299 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1264 . . . . . . . . . . . . . . . . . Bhi01g02657 . . . Hepe05g1252 . Lcy11g1192 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325