Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1275 ATGAAGAAGGCCTTTGGTCAGACTGTTAGGGACTTAAAGAGAGAGGTCAATAAGAGCGTGCTCAAAATTCCTAAAATAGAGCAGAAGGTTCTAGATGCCACTAGCAACGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATTATGGGAATACTCTGGAAGCGGATTAATGATACTGGAAAGAATTGGAGACATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTCGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCGACCTTATCTGATTTTCAATACATCGACTCCAGTGGGAGGGATCAGGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTATCCTTGTAAATGATAAAGAAAGGATTATTGAGGTTAGACAGAAGGCTGCTGCTAATAGGGAAAAGTTCCGCACCCCATCATCTATGGGCAGTATGTATAGACCAAGTGCAGGAGGATATGATGACCGCTATGAAGGACGATCTGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGAAGGGAAAGAGAATATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGGCGTGATATTGAAGAACGCTATAACAGAGATGGTTATAGGGATGATGATTATCGAGGAAGAAGCCAAAGCACTGATGACTACCAGTACGGTTCAAGGAGCAGGAGCTCTGACAGAAATGGAGAACGTACATATGATGATGATGGCCAAGCTTCTTCTCGCAACAATGGTGCTAGAGCTGACGAACAATCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCCGCCCAGTTACGAAGAAGTTGTGAGTGAATCTGGAGGCACTGTGCCTAGTCAAAGAGATGTAGAAGTTCCAGCAACTACTGCTGCTCCGGGAGCTTTTCCTCCGCCCACGTCCAGTACTCCAAGCCAGCTAACTACTCATGGAACTCCTGCATCCCCGCCTACCCAGGGACTTGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTTCAGCTGCTCCAACTGTCCCGAGCAGTTTGGAGACAAATTTATTCGATTCCTTGGCCTTGGTGCCTGTTGGGCCAGTAACATCATCTGCAGACGCTGAGAGTTATGTTCAGACAAGCTCTGGTGTGGGATCCTATACTCAAAATCAGGCTTTTGAAGACCCATTTGGTGACTCGCCTTTTCAAGCCATTACGTCCTCTGGCATCCAAGATCAAGCACATTTTCACCGTGGGGAGTCGTTTGCTGCAGCAACTTATTCTACACCTGTTCAACCTCAACCGAACTTGCACCGTCCTCGTGAAGAGTTTCTGCAACATCAAAATATTGGTGTCCTGGCTGATCTCCTTCCTCCTGAATCTGCTGCTGTTTCACAGCCCACATTTACAGCATCAAACAGCCAACCAGTACAACCACATTCTAACTTGGGGAATTATCAGCAAGATGGAAATATGGCTCCTGTGAATTTTCAAAATCAAACAGAACCCGGGAGAGAGTTCGGCAATGGGATGTTCATGGCACAGGGAGGAACACCAGCTCATGTCAATTCATATATGGTTCCTCCAAATGCTGGACATAATACACAGCCCAACAATTTTGGATATTCTCACGCTGGTTCTGTAGGTCCCACGAGTTCTCATGTCGCACTTCAAATTACAGGACCACCTGCTCGGCTTGCTAGTGGGAACTTCAATCCGCCACACGGTTCTGTAGCTCCAGTAGCTTCTCATGTAGCTTACCAACCCTCAAATTTTCCTAATCCTCAAGCAGGAACCTATACATCCATGGCTTCCCAGCAAATTCCTCCTTCAGCTGGATCACTTTCAACTGCGCCTCAAGCTTCGAAGATGCAGTTTGAGACCAAGTCCACAGTATGGTCCGACACATTAACTAGAGGCCTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCGTTGGTGGATATTGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGGTATCTACCATTAACATGGGTAAAGCAATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCAGGTGCACTAAGGCCTTCCCCAAATGCAATGTCGGGTTCGGGAATGGGAATGGGCATGAACCCCAATCCTGGCATGGGCATGGGTATGAGAGGATATGGAGGTATGAATCAACAACCCATGAGTGGAATGGGGATGAATATGGGTATGGGGCAACAAGGAATCCAGATGCAGCAACCTCGAGCGAACATGCCTGGTGTATACAATCCGATGATGGGTACTGGTGGTTATGCCCCTCAACAGCCACCGTACGGCAGCTACCGATGA 2442 46.48 MKKAFGQTVRDLKREVNKSVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSSGRDQGNNVRKKSQNLVILVNDKERIIEVRQKAAANREKFRTPSSMGSMYRPSAGGYDDRYEGRSGSRDGDRNVDSYGREREYGFRDDRSGRNEDSYGRDIEERYNRDGYRDDDYRGRSQSTDDYQYGSRSRSSDRNGERTYDDDGQASSRNNGARADEQSQDGRQLERKFSEQNIGAPPSYEEVVSESGGTVPSQRDVEVPATTAAPGAFPPPTSSTPSQLTTHGTPASPPTQGLDGSDEFDPRGSVSAAPTVPSSLETNLFDSLALVPVGPVTSSADAESYVQTSSGVGSYTQNQAFEDPFGDSPFQAITSSGIQDQAHFHRGESFAAATYSTPVQPQPNLHRPREEFLQHQNIGVLADLLPPESAAVSQPTFTASNSQPVQPHSNLGNYQQDGNMAPVNFQNQTEPGREFGNGMFMAQGGTPAHVNSYMVPPNAGHNTQPNNFGYSHAGSVGPTSSHVALQITGPPARLASGNFNPPHGSVAPVASHVAYQPSNFPNPQAGTYTSMASQQIPPSAGSLSTAPQASKMQFETKSTVWSDTLTRGLVNLNISGPKANPLVDIGVDFEALNRKEKRMEKPSTAPVVSTINMGKAMGSGSGIGRAGAGALRPSPNAMSGSGMGMGMNPNPGMGMGMRGYGGMNQQPMSGMGMNMGMGQQGIQMQQPRANMPGVYNPMMGTGGYAPQQPPYGSYR 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60286076 60295113 - Hsped.05g12750.1 Hepe05g1275 570540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1275 813 Gene3D - 23 162 IPR008942 -
Hepe05g1275 813 CDD ENTH 26 142 - -
Hepe05g1275 813 MobiDBLite consensus disorder prediction 249 266 - -
Hepe05g1275 813 Pfam ENTH domain 25 146 IPR013809 -
Hepe05g1275 813 MobiDBLite consensus disorder prediction 336 354 - -
Hepe05g1275 813 FunFam Clathrin interactor 1 16 162 - -
Hepe05g1275 813 MobiDBLite consensus disorder prediction 177 240 - -
Hepe05g1275 813 MobiDBLite consensus disorder prediction 624 646 - -
Hepe05g1275 813 SUPERFAMILY ENTH/VHS domain 23 162 IPR008942 -
Hepe05g1275 813 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Hepe05g1275 813 PANTHER EPSIN/ENT-RELATED 1 756 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Hepe05g1275 813 MobiDBLite consensus disorder prediction 153 373 - -
Hepe05g1275 813 SMART enth_2 24 150 IPR013809 -
Hepe05g1275 813 MobiDBLite consensus disorder prediction 489 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1275 K12471 - - csv:101208671 1207.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1275 Hepe-Chr5:60286076 Hepe08g1372 Hepe-Chr8:16099623 1.25e-63 dispersed
Hepe05g1275 Hepe-Chr5:60286076 Hepe03g0987 Hepe-Chr3:51995784 4.40e-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53