Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1286 ATGAATAGAGCTATGAATGTGGTGGCTGCTTTGACATTGGTGTTGATGGTTGTGATTGGTTTGAGTGAAGCTCAAACCATATGCAACATGTCAGCTGCTGGTTTGTATGCATGTAGACCGTCGGTGACGCCTCCGAACCCGACACCGCCGAGCGCCGATTGCTGCATGGCGCTCTCGCACGCTGACTTGCACTGTTTTTGCGCGTACCGAAACTCGGGAGCTCTCCCTTCTCTTGGCATTGACCCTAATCTTGCCTTCGAGCTGCCAAAGAAATGCAATCTTCATAACTCTCCAAATTGCTAG 303 50.5 MNRAMNVVAALTLVLMVVIGLSEAQTICNMSAAGLYACRPSVTPPNPTPPSADCCMALSHADLHCFCAYRNSGALPSLGIDPNLAFELPKKCNLHNSPNC 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60595766 60596452 - Hsped.05g12860.1 Hepe05g1286 570551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1286 100 CDD nsLTP_like 28 98 IPR044741 -
Hepe05g1286 100 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 99 IPR036312 -
Hepe05g1286 100 Gene3D - 24 100 IPR036312 -
Hepe05g1286 100 PANTHER LIPID BINDING PROTEIN-RELATED 4 100 IPR039265 GO:0005504(InterPro)|GO:0009627(InterPro)
Hepe05g1286 100 SMART aai_6 28 100 IPR016140 -
Hepe05g1286 100 Pfam Probable lipid transfer 22 99 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g2115 Hepe-Chr3:79197302 Hepe05g1286 Hepe-Chr5:60595766 1.08e-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1101 . . . . . . . . . . . . . . Sed02g1054 . . Bhi01g02616 Tan10g1226 Cmetu01g1559 . Hepe05g1286 . Lcy11g1244 . . . . . . . . . . . . . . Cme07g01844 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01589 Cam07g1685 Cec07g1782 Cco07g1743 Clacu07g1669 Cmu07g1636 Cre07g2010 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002990 1 1 0 1 2 1 3 1 2 1 2 1 3 2 2 4 1 2 4 2 1 1 2 0 1 2 2 2 2 1 50