Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1292 ATGTACCAATCAAATTCCTCCTCTTCTTCCTCTCAGAAATCCATGGCCTCCCCCCACGGCGGCGCCGGTGTTGGAGGCAGCGGCGGCGCCGGTCTCACTCGGTACGGTTCCGCCCCTGGCTCTCTCCTGACCTCGGCGGTGGATTCTGTGATCGGGAATCGGCATCCGGACTCCGCCGCGTCGCACCGTACGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCGGCTGACTCCTCCGTCGTGGAGTCCTCTCGCAAGGTCGTTCAATCGTCATCGGCGGCGGCGGCGGCCTTGCAGCGGTCGTACGGAATCCACGATTTGGCACTAGGAGATTTCTCGACGGCTAGGAATTTCAATAGCAATGGTGGTCAATCGTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCAGCCATCTCTCCGTCGCTGAACCAAACGGAGGATTTTCTTTGACGAGGGGAGGTGGAGGGCATGGAGTAGGAAGGCTGAAGTCCCAACTGAGCTTCAGTGGGCAAGATTCATTGTCTCAAATCTCTGAAGAAATGAGTGAAAGTCATGTTGTGGAGGGTGTCAACTCTTCTACAAATAATAATAATAATGGTTTTGCTATGGATTCTTGGGACACTTCTAATTCCATTGCTTTTGCTGCCCCTCAAGCCAAAAGATCCAAGCACCATTCTGATGCTGACTTCTTCAATTGCCTCACTGGCCTTGAGTCCCAGTTTAGCCTGCCGCAGACAAGTCTGGAAATGGCAACTGTAGAGAGATTGCTTCAAATTCCAGAAGACTCTGTTCCTTGTAAGATTCGAGCCAAGCGAGGCTGTGCCACTCATCCTCGTAGCATCGCCGAAAGGGAGAGGAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAACTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGCCTCCAAAATCAAATTCAGAAGCTTAACAAAGATGTTGAGAATTGCACCTGTGGAAGCAATGAATGCTCATAA 1059 51.46 MYQSNSSSSSSQKSMASPHGGAGVGGSGGAGLTRYGSAPGSLLTSAVDSVIGNRHPDSAASHRTPPSFGGHYFSSADSSVVESSRKVVQSSSAAAAALQRSYGIHDLALGDFSTARNFNSNGGQSSSSSPLVRQRSSPAGFLSHLSVAEPNGGFSLTRGGGGHGVGRLKSQLSFSGQDSLSQISEEMSESHVVEGVNSSTNNNNNGFAMDSWDTSNSIAFAAPQAKRSKHHSDADFFNCLTGLESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKDVENCTCGSNECS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60767133 60775501 - Hsped.05g12920.1 Hepe05g1292 570557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1292 352 MobiDBLite consensus disorder prediction 1 17 - -
Hepe05g1292 352 Pfam Helix-loop-helix DNA-binding domain 286 331 IPR011598 GO:0046983(InterPro)
Hepe05g1292 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 343 IPR036638 GO:0046983(InterPro)
Hepe05g1292 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 339 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe05g1292 352 CDD bHLH_AtbHLH_like 285 337 IPR045239 -
Hepe05g1292 352 Coils Coil 320 347 - -
Hepe05g1292 352 FunFam Transcription factor bHLH130 family 281 349 - -
Hepe05g1292 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 330 IPR011598 GO:0046983(InterPro)
Hepe05g1292 352 SMART finulus 286 336 IPR011598 GO:0046983(InterPro)
Hepe05g1292 352 Gene3D - 281 347 IPR036638 GO:0046983(InterPro)
Hepe05g1292 352 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1726 Hepe-Chr3:74167000 Hepe05g1292 Hepe-Chr5:60767133 1.62e-35 dispersed
Hepe05g1292 Hepe-Chr5:60767133 Hepe09g1096 Hepe-Chr9:12261210 1.73e-38 dispersed
Hepe05g1292 Hepe-Chr5:60767133 Hepe05g0556 Hepe-Chr5:7775011 1.42e-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55629 PF00010 HLH 9.30E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1292 - - - 0.0