Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1307 ATGGAGAAAGAGTTCTTCTTGAACGATGGATGTAGCTTTTATGGGATGGAAATCCAACCCAATGAGCTGAATTCAAGTGGGTTGTTCAACAATCCCAATTGGGATAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGCGAATTCCCACGCTGGAACAGTCATCGGCGGCGGTGGTGAGAACTTGATGATGCGAGAATTGATTGGAAGGCTTGGGAGCATTTGTAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAATAATAGTGCCAATACTTCTTGTTACAATACGCCTTTGAATTCGCCTCCGAAGCTTAATTTGTCGTCGATCATGGAGTCTCCGGTGAGAGGGAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGGGCTGCTAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGTGAATGGGCAATTGGGTTCTAATGAAACTCAAGAATTAGGTAACAGATCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGGGTTTCAAGTAACAAATCCTTCAATGTTGGTGGAATTGGATCTCAAATGGGGGTTCAGGAAAGCAACCAAAGCCCTAAAGGGAATTCAATGCCCAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCCGGTGATTCCCGGGAGGGATCTTCGGTTTCGGAGCAGATTACATGTGGGGAATTGGGTTTCAAAGGTAAAGCTGCAGTCAACACTAGGAAAAGGAAATCAGTTCACACTGGTGAAGCAAATGATGTGAAGGCTGCAGGAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATTGATGCTGCAAAGGGGAAAGCAGAGGCAAAAGATGGCACAAAAGCTTCAGGAGATGCAAATCAGAAGCAAAACAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTTCGACGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTTGAGTTTCTCTCGATGAAATTGACGACTGTCAATCCAAGGATGGAATTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATTCGGCTTACCCTATGGATTCATCTGTGCCCACGTTCGCATACGAATATCAATCTATGCACATGCCTCCTCTTCATTCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCAGCAAGTGATGTGATGCAAAGAAATCTAAGCGGTCAAATGCCGAGCGGGTACAGCGAAGTCGGGAATGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCAACACTGTAGTTCAAATGGGTTATGGACAGAACCAGCTGCAGAATTCTAATGATGAGATGAAAAATGAATTGTAA 1617 44.03 MEKEFFLNDGCSFYGMEIQPNELNSSGLFNNPNWDNSMDQSDLFESTLSSIVSSPANSHAGTVIGGGGENLMMRELIGRLGSICNSGEISPHSYIGGTNNNSANTSCYNTPLNSPPKLNLSSIMESPVRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGVNGQLGSNETQELGNRSMAGAGVESGKLSRVSSNKSFNVGGIGSQMGVQESNQSPKGNSMPNKKVLNRFSRSSTPENAGDSREGSSVSEQITCGELGFKGKAAVNTRKRKSVHTGEANDVKAAGENHESNGKKIKPEEVSKKEIDAAKGKAEAKDGTKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTVNPRMEFNMETLLPKDIFKGPGSSPHSAYPMDSSVPTFAYEYQSMHMPPLHSNGTEKQFSVASASDVMQRNLSGQMPSGYSEVGNGIQISKFWEDELNTVVQMGYGQNQLQNSNDEMKNEL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61222815 61225782 + Hsped.05g13070.1 Hepe05g1307 570572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1307 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 404 IPR011598 GO:0046983(InterPro)
Hepe05g1307 538 MobiDBLite consensus disorder prediction 196 254 - -
Hepe05g1307 538 Pfam Helix-loop-helix DNA-binding domain 358 405 IPR011598 GO:0046983(InterPro)
Hepe05g1307 538 MobiDBLite consensus disorder prediction 273 323 - -
Hepe05g1307 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 424 IPR036638 GO:0046983(InterPro)
Hepe05g1307 538 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 482 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe05g1307 538 SMART finulus 360 410 IPR011598 GO:0046983(InterPro)
Hepe05g1307 538 MobiDBLite consensus disorder prediction 324 338 - -
Hepe05g1307 538 Gene3D - 351 426 IPR036638 GO:0046983(InterPro)
Hepe05g1307 538 CDD bHLH_AtBPE_like 344 429 - -
Hepe05g1307 538 MobiDBLite consensus disorder prediction 268 344 - -
Hepe05g1307 538 FunFam Basic helix-loop-helix transcription factor 351 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2699 Hepe-Chr2:74908893 Hepe05g1307 Hepe-Chr5:61222815 3.17e-32 dispersed
Hepe03g1340 Hepe-Chr3:69805215 Hepe05g1307 Hepe-Chr5:61222815 5.62e-67 dispersed
Hepe05g1307 Hepe-Chr5:61222815 Hepe10g1832 Hepe-Chr10:55051312 1.11e-50 dispersed
Hepe05g1307 Hepe-Chr5:61222815 Hepe02g0492 Hepe-Chr2:4842224 1.92e-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55632 PF00010 HLH 1.20E-05 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1307 - - - 0.0