Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1313 ATGGCCGATTTCCTCTGGACATTTGCAGTGCAGGAGATTCTCAAGAACACATTGCAGCTTGCAGCCGAGCAAATCCGTCTCGCCTGGGGTTTCAAGCCGGAGCTCTCCAAGCTCTGCACCTCTCTGCTCCTCATCGAAGCCATTCTTCGCGATGTCGATCGAGCAAATTCCGATCGAGAATCGGTCAAGATTTGGGTTGCTAAGCTTCAGGATTTAGCCCTCGACGCGGAATTTTTACTGGACGAACTCTCCTACGAGAATCTTAGGCGTCAATTGGACCTCAATGGAGATGGCAAGAAATTGGTACGCGATTTCTTTTCCTTCTCTACGAACCCTTTGGTTTTTAGGTTGAAAATGGCTCACAAAATTAAAACCATCACCCAAGTTTTGAATGAGATTAAAGGGGAGGCGAGTGCTGTGGGGGTTATTGGTGAAGTCAGGAGTAGGGATATAGATGCTGATAATGGCCAAATTCCAGAGACTGATTCATTTCTTGACGAGTTTGAAGTTTTAGGAAGAGGGGTTGATATATCAAGAATAGTGAATATAGTTGTTGATAGTGCCACTCATGATAGGATCTCTGTAATTCCTATTTTGGGCATGGGTGGTCTTGGAAAGACAACTGTGGCAAAAGCAGTCTTCAACCATGAGCTTGTGAAAGCACATTTTGATGAAACTATTTGGGTGTGTGTGACTACAACTTTTGATGACAAGAAGATTTTAAGAGCGATTTTGGAATCTCTGACCAACTTTCCAAGTGGTTTGGATAGTAAGGATGCTATACTTAGAAGGCTACAAAAGGAGCTGGAAGGGAAAAGGTACTTTCTTGTGCTGGATGATGTGTGGAATGAAAATGTTAAACTATGGAATCATTTGAAGAGTCTTTTGCTAAAGATTACAAATAGTATTGGGAATAGAGTTCTTGTGACGACTAGGAGTGAGGAAGCTGGAAAAATCATGGAGACATTTCCCATTTATCATTTACAGAAGTTATCAGATGATGAATGCTGGTCAATATTCAAGGAAAGAGCATCTGCAAATGGACTACAATTGACTCAAGAATTGGAAACTATGAAGAATGTGCTTGCAGAGCAGTTTGGAGGCATTCCATTGGTTGCAAAAGTCTTGGGAGGGGCTGTACAAATTAAGAAAAGAAGCAAGACTTGGTTGATGTCAACATTGGAGACCCTTATTATGAATCCATTACAAAATGAAGATGATGTTTTGTCTATTTTGAGATTAAGCGTGGATCGTCTGCCAAACTCGTCATTGAAACAATGCTTTGCCTATTTTTCAAATTTTCCCAAGGGATTTAACTTTGAAAAGGAACAACTAATCCAATTTTGGATGGCAGAAGGGTTCATTCAACCTTCTGATCAAGCACACACTGAAACCATGGAAGATATAGGAGACAAGTACTTCAATATCTTGCTGGCTCGTTCCTTATTTCAAGATATTGTTAAAGATGAGAATGGTAAAATTACTCACTGTAAGATGCATCATCTTCTTCACGATCTTGCATATTCCGTCTCAAAATGTGAAGCATTGGGTTCAGATCATATTGGTCTAGCTGATGACGTTCCTCCAATTCGACAATTATCCTTGATTGGTTGCGACCAAAATGTAAATTTGCCTCCTAGAAGAAGCATGCAGAAGCTGCGTTCTTTATTTTTAGATAGAGATGTGTTTGGCCACAGAATTATAAATTTCAAGCGCTTGCGTGTTCTGAACATGTTCTGTTGTGAAATCCATAACTTGCCAACTTCAATTGGGAGGTTAAAGCATCTAAGGTATCTAGATGTTTCAAATAATAGGATAAAGGAACTTCCAAAGACTGTTGTTAAGCTTTTCAAATTGCAGACCCTGAGACTTGGTTGTTTCCATGGAGAAGCCCCCAAGAAATTCAGAAAATTGGTCAGCTTGAGACATTTCTATATGAATGTTAAAAGACCAACAACTAGGCACATGCCTTCTTATCTAGGTAGGTTGGTTGATCTTCAATCCTTGCCTTTTTTTGTTGTTGGCATGAAGGAGGGTTCTCATATAGAAGAGCTTGGATACTTGAAAAATCTCAGAGGTAAATTAAAGCTTTACAATCTTGAATTAGTAAGAAATAAGGAGGAAGCCATGGCGGCAGAGTTGGTAAAAAAAGATAAGGTGTACAAATTGAAACTAGTATGGAGCGATGAAAGAGAGGTTAATGATAACCATGACATTTCTGTTTTAGAAGGACTTCAACCACACAAAAATCTCCAATACTTGACAGTTGAAAACTTTATGGGAGAACTTTTTCCAAATCTTACTTTTGTTGGAAATTTGGTGAAGGTTTCTCTGAAAAATTGTAGCAGATGTAGAAGAATCCCAACATTTGGACATTTGTCCAATCTTAAGGTTCTTGAGATTTCTGGATTGCACAACCTAAAAAGTATAGGGACTGAATTCTATGGGAATGAAAATGATGGGAGAAGTTTGTTTCCGAAACTGAAAAAATTTCATCTTTTGAACATGGAGAATTTAGGACGTTGGGATGAAGCAGCAGTTCCATCAGAAGTTGCGGTTTTTCCATGCCTCGAAGAGTTGAAAATTCTTGACTGTCCCAGATTAGAAATTGCCCCTGATTACTTCTCAACTCTTAGGACATTAGAAATTGATGATGTCAACAACCCAATTTCACAGATAACTCTTCAGACATTTAAGCTACTTGGCATTATACACTCTGGCAACCTGAGTGGTTTGCCTGAGGAGCTACGTGGTAATCTGTCATCTCTTGAGGAGTTTAAGGTTTGGTATTACATTCACTTAAAATCCTTTCCAACCATTGAGTGGCTCACTGATCTTCTGAAATGCAAGATTGGATATGACACAAAATGGACAAATATTCAATCTCATCAGCTAGAATCATACAGTTCTGTAAATGAATTGTCTATTGTTGGCTACCCTGATCAAACATCAACCCCAGATATAAAAGCATTTTATAATCTTTCGTCTTTAACAATTACTGGCTTGAAGAGATTGCCAAAGGGATTTCACTGCCTCACTTGCCTGAGAAGTTTGTCAATGGGTGGATTCATGGAAGGGTATGATTTTAGGCCTCTTTTACATCTTGAGTCTCTGGAAAATCTAGCATTGATAGACTTTGGTAGTACAGAAAGCGCACTTCCAGACGAGCTTCAGTACCTCTCTGGCTTAAAGCACTTGAAAATTGTTGGCTTTCAAGGCATTGAATCTCTGCCAGAGTGGTTAGGAAATCTTACCTCATTGGAAAGTTTGCACCTTGAGAGTTGCAGAAACTTGAGAGAGCTTCCAGAAGCCATGGGCTGCCTCACCAAATTGGAGGAATTGCGCAGTTTCAATTGCCCTGAGCTGAGGCTTCGCCAAGAAGAACCAGAATGGGCCAAGATTTCGCACATTTCAAGATTCATATCGTTCAATTATTGGGTTGATGAGGACCAACAGAGGATTCAATTCAAAGTCTGCCACAAACCTAGCTAG 3492 39.66 MADFLWTFAVQEILKNTLQLAAEQIRLAWGFKPELSKLCTSLLLIEAILRDVDRANSDRESVKIWVAKLQDLALDAEFLLDELSYENLRRQLDLNGDGKKLVRDFFSFSTNPLVFRLKMAHKIKTITQVLNEIKGEASAVGVIGEVRSRDIDADNGQIPETDSFLDEFEVLGRGVDISRIVNIVVDSATHDRISVIPILGMGGLGKTTVAKAVFNHELVKAHFDETIWVCVTTTFDDKKILRAILESLTNFPSGLDSKDAILRRLQKELEGKRYFLVLDDVWNENVKLWNHLKSLLLKITNSIGNRVLVTTRSEEAGKIMETFPIYHLQKLSDDECWSIFKERASANGLQLTQELETMKNVLAEQFGGIPLVAKVLGGAVQIKKRSKTWLMSTLETLIMNPLQNEDDVLSILRLSVDRLPNSSLKQCFAYFSNFPKGFNFEKEQLIQFWMAEGFIQPSDQAHTETMEDIGDKYFNILLARSLFQDIVKDENGKITHCKMHHLLHDLAYSVSKCEALGSDHIGLADDVPPIRQLSLIGCDQNVNLPPRRSMQKLRSLFLDRDVFGHRIINFKRLRVLNMFCCEIHNLPTSIGRLKHLRYLDVSNNRIKELPKTVVKLFKLQTLRLGCFHGEAPKKFRKLVSLRHFYMNVKRPTTRHMPSYLGRLVDLQSLPFFVVGMKEGSHIEELGYLKNLRGKLKLYNLELVRNKEEAMAAELVKKDKVYKLKLVWSDEREVNDNHDISVLEGLQPHKNLQYLTVENFMGELFPNLTFVGNLVKVSLKNCSRCRRIPTFGHLSNLKVLEISGLHNLKSIGTEFYGNENDGRSLFPKLKKFHLLNMENLGRWDEAAVPSEVAVFPCLEELKILDCPRLEIAPDYFSTLRTLEIDDVNNPISQITLQTFKLLGIIHSGNLSGLPEELRGNLSSLEEFKVWYYIHLKSFPTIEWLTDLLKCKIGYDTKWTNIQSHQLESYSSVNELSIVGYPDQTSTPDIKAFYNLSSLTITGLKRLPKGFHCLTCLRSLSMGGFMEGYDFRPLLHLESLENLALIDFGSTESALPDELQYLSGLKHLKIVGFQGIESLPEWLGNLTSLESLHLESCRNLRELPEAMGCLTKLEELRSFNCPELRLRQEEPEWAKISHISRFISFNYWVDEDQQRIQFKVCHKPS 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61295399 61300891 + Hsped.05g13130.1 Hepe05g1313 570578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1313 1163 SMART LRR_typ_2 1084 1108 IPR003591 -
Hepe05g1313 1163 SMART LRR_typ_2 593 616 IPR003591 -
Hepe05g1313 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 430 IPR027417 -
Hepe05g1313 1163 Pfam Rx N-terminal domain 9 96 IPR041118 -
Hepe05g1313 1163 Gene3D Ribonuclease Inhibitor 898 1144 IPR032675 -
Hepe05g1313 1163 Gene3D Ribonuclease Inhibitor 545 897 IPR032675 -
Hepe05g1313 1163 Gene3D - 8 124 - -
Hepe05g1313 1163 Gene3D - 411 509 IPR036388 -
Hepe05g1313 1163 ProSiteProfiles Leucine-rich repeat profile. 595 616 IPR001611 GO:0005515(InterPro)
Hepe05g1313 1163 PANTHER DISEASE RESISTANCE PROTEIN RP 35 929 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Hepe05g1313 1163 Pfam NB-ARC domain 190 417 IPR002182 GO:0043531(InterPro)
Hepe05g1313 1163 SUPERFAMILY L domain-like 498 883 - -
Hepe05g1313 1163 Gene3D - 154 323 IPR027417 -
Hepe05g1313 1163 Coils Coil 688 708 - -
Hepe05g1313 1163 FunFam Probable disease resistance protein At1g63360 416 509 - -
Hepe05g1313 1163 SUPERFAMILY L domain-like 900 1133 - -
Hepe05g1313 1163 PRINTS Disease resistance protein signature 268 282 - -
Hepe05g1313 1163 PRINTS Disease resistance protein signature 791 807 - -
Hepe05g1313 1163 PRINTS Disease resistance protein signature 366 380 - -
Hepe05g1313 1163 PRINTS Disease resistance protein signature 195 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1313 Hepe-Chr5:61295399 Hepe08g1123 Hepe-Chr8:11218313 2.26e-268 dispersed
Hepe05g1313 Hepe-Chr5:61295399 Hepe08g1311 Hepe-Chr8:14875639 6.79e-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1255 . . . . . . Bma04g00863 . . . . . . . Sed02g1078 . . Bhi01g01169 Tan10g1170 Cmetu09g1097 . Hepe05g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325