Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1330 ATGGCCAGAGCTCCATTCCACACTCCGGCCAACTTTCTGACCTCTCCATGTCTCCAATCGTGCCATTTACGACGCCATGGCTGCCTCCGCTCTCCATTTCTCACCCAGACGAGTCCAGTTCCCGCAACTAAGCTGGTGATTGTTGGTGGTTGTTTAATCGCCGGTTATGCTCGCAAATCGGTGGATTCTGCTGGAGTTTATCAGCTCACTGACGATGAAGACTTTACCGTTTCTTCCTCCGATTACGATGGAGATGAGACGGTTGACGATGGAGGTATTAAGACTTCAGGAACACGCAGGAGGATATCTATTGGAAGTTTTGGAAGATTAAAAACTCAAAAAGTTAAGGCAATTGTGACAAAAGGGGCTAAGAGAAATGAAGAGTTTAGAGATGATGTCCGAGAACCAACTCCTAAAAATGGGTCATCTCATATATCTGATCGTCCACACTCTAAAGTTAAAACTCTTGGAGAAAAGAAGAGGGTAAATGCCTCAAGAAATGGAGAAAATTTTTCAAGACCATCTGAACAGCCAGATGGAGATAGACATCATAGAACTTCGCCCAATGTATCGAGATCCGAGCAATTAGTTCCTGCAGGTTCTGCTGCTTCCTTCAGAGGATGGGGCTCTAGAGGGCCCTCAGATTCTGAGTATGAACCAACCCAGCCTAAACAACAGAAGTTTTCCTCGGAGAAGGGCTTTTATAGCCGAAAGTCATTTAAAGATCTTGGGTGCACTGAATATATGATTGAATCACTGAGGAGGCAGAATTTCCTACGTCCTGCACAGATTCAGGCCAAGGCATTTGCATCAGTTATTGAACGAAAGAGTTGTATCATTTCTGATCAAAGCGGATCTGGTAAGACATTAGCATATCTTGCACCATTAATCCAGCGTCTGAGGCAGGAAGAACTTGAAGGACTTCGAAAATCTTCTTCACAAAGTCCCCAAATTGTTATCATTGCGCCGACAGCAGAATTGGCTTCTCAGGTCTTAAGTAATTGCCGATCCATTTCAAAATTTGGGGTGCCATTTAGGTCTATGGTTGTGACAGGCGGTTTCCGGCAGAAAACTCAACTTGAAAATCTACAGGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGTTTCTAATGAATGAAGGCTTCTTGCAGCTATCAAATCTAACATGTGTTGTAATGGACGAGGTAGATATCCTTTTTAATGACGAGGACTTTGAAGTTGCATTGCGGACTTTAATGAAATCTGCACCTGTTAACACACAATATCTATTTGTGACTGCAACTTTACCAGTTGACATATATAATACATTAGTAGAAAATTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGGATAAGTCCTTTCCTGGAAGAGGTTCTTGTAGATTGTAGTGGTGAAGATGAGCAGAACAAAACACCGGATGCTGCTTTCTCGAATAAGAAAGATGCCCTCCTGCAGATTGCAGAAGGAACTCCGGTTGCAAAAACTATTGTTTTCTGTAACAAGATTGAGACATGTAGAAGAGTTGAAAATGCATTACAGCGTTTTGATAGAAAAGGTAGCCATTTGCAAGTTTTTCCATTTCATGCTGCCCTAGCAAGAGAGTCACGGCTTGCAAATATGGAGGCATTCACCAATTCTCATTCTAAACAAGTATCCCAGTTCTTGGTTTGCACTGATAGGGCATCACGTGGAATTGATTTTCCAAATGTGGATCACGTCATACTCTTCGACTTCCCCCGTGATCCTAGCGAGTATGTTCGCCGTGTTGGAAGAACTGCCAGAGGTGCTACAGCAAAAGGAAAAGCATTCATCTTCGTGGTCGGAAAGCAGGTGTCGCTTGCACGGAGGATAATCGAAAGAAACAAGAAAGGTCACCCGGTGCATGATGTGCCATCTGCTTATGAGCTTACATACTAA 1938 43.29 MARAPFHTPANFLTSPCLQSCHLRRHGCLRSPFLTQTSPVPATKLVIVGGCLIAGYARKSVDSAGVYQLTDDEDFTVSSSDYDGDETVDDGGIKTSGTRRRISIGSFGRLKTQKVKAIVTKGAKRNEEFRDDVREPTPKNGSSHISDRPHSKVKTLGEKKRVNASRNGENFSRPSEQPDGDRHHRTSPNVSRSEQLVPAGSAASFRGWGSRGPSDSEYEPTQPKQQKFSSEKGFYSRKSFKDLGCTEYMIESLRRQNFLRPAQIQAKAFASVIERKSCIISDQSGSGKTLAYLAPLIQRLRQEELEGLRKSSSQSPQIVIIAPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRLMFLMNEGFLQLSNLTCVVMDEVDILFNDEDFEVALRTLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIMGPGVHRISPFLEEVLVDCSGEDEQNKTPDAAFSNKKDALLQIAEGTPVAKTIVFCNKIETCRRVENALQRFDRKGSHLQVFPFHAALARESRLANMEAFTNSHSKQVSQFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATAKGKAFIFVVGKQVSLARRIIERNKKGHPVHDVPSAYELTY 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61665005 61672387 + Hsped.05g13300.1 Hepe05g1330 570595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1330 645 CDD SF2_C_DEAD 485 613 - -
Hepe05g1330 645 MobiDBLite consensus disorder prediction 121 138 - -
Hepe05g1330 645 CDD DEADc 249 450 - -
Hepe05g1330 645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 645 IPR001650 -
Hepe05g1330 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 625 IPR027417 -
Hepe05g1330 645 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 97 642 - GO:0003729(PANTHER)
Hepe05g1330 645 Pfam Helicase conserved C-terminal domain 486 601 IPR001650 -
Hepe05g1330 645 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 238 266 IPR014014 GO:0003724(InterPro)
Hepe05g1330 645 MobiDBLite consensus disorder prediction 145 166 - -
Hepe05g1330 645 Pfam DEAD/DEAH box helicase 263 435 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Hepe05g1330 645 MobiDBLite consensus disorder prediction 215 232 - -
Hepe05g1330 645 SMART ultradead3 257 465 IPR014001 -
Hepe05g1330 645 MobiDBLite consensus disorder prediction 78 100 - -
Hepe05g1330 645 MobiDBLite consensus disorder prediction 175 189 - -
Hepe05g1330 645 Gene3D - 462 637 IPR027417 -
Hepe05g1330 645 Gene3D - 211 450 IPR027417 -
Hepe05g1330 645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 450 IPR014001 -
Hepe05g1330 645 MobiDBLite consensus disorder prediction 121 232 - -
Hepe05g1330 645 SMART helicmild6 513 603 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1330 K13179 - - csv:101214337 1071.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1330 Hepe-Chr5:61665005 Hepe07g2421 Hepe-Chr7:68582613 1.04e-35 dispersed
Hepe05g1330 Hepe-Chr5:61665005 Hepe06g0106 Hepe-Chr6:3421032 1.58e-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31