Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1338 ATGAGAGTTGGGAAGTACGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCTGCCGACCTCCGTACCGGCCGCCGTTTCGCCGTCAAGATCCTCGACAAGACCAAGATTCTTCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATTAGCACTCTCAAGCTCCTCAGGCATCCAAACGTTGTTAGACTCTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTTTGGAGTGCGCTGCTGGTGGTGAATTGTTTGATCGAATTGAATCGAAAGGTAAGGTGGATGAAGCTGAAGGACGAAGGCTCTTTCAGCAGCTTATTGATGGTCTAAGCTACTGCCATGACAAAGGAGTTTATCACAGGGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGGAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGCTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAAGTACTTGCTAACAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTCACAGCTTGTCTTCCTTTCGACGAGACCAATCTGGCTCTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACAATAACAGGAATTCAAGAGGATGAGTGGTTCAAGAATGACTATAATCCTGCTTCTCTTTGTTATGATGATGAGGAGGAAGGTCCACTCATTGATCAGGATGATGCCATCTCAATGCATGATGAGCCAACTGACGTTGAAAACAACAGCCCAGAATCTCCCTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTCTGGATCTGTCTGGCTTCTTTGAGCAAGAGGACGTTTCGGAGAGGAAGATCAGATTTACATCCAACCATTCTGCCAAAGACTTGCTCGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTCCAGAAGAAAAGTGGAAAGTTGAAAGTGATGCAAGAGATGAGAAGTCTCAGAGGCCTAAGTAATCTCTCATTTGAAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAGTCTTTTGGAGATTCATCATCTTACAGACAGTTGTGTGAAAGACTGTCAAATGATTTGGGCATAAACCCAGAGCTCGAACGGCTTAATTCAAGCAGCTCATTCACATTAAACAGTTAA 1326 43.89 MRVGKYELGKTLGEGNFGKVKLAADLRTGRRFAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECAAGGELFDRIESKGKVDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITITGIQEDEWFKNDYNPASLCYDDEEEGPLIDQDDAISMHDEPTDVENNSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKLKVMQEMRSLRGLSNLSFEAEVFEISPLLHVVELKKSFGDSSSYRQLCERLSNDLGINPELERLNSSSSFTLNS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61764598 61769610 - Hsped.05g13380.1 Hepe05g1338 570603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1338 441 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Hepe05g1338 441 FunFam Non-specific serine/threonine protein kinase 304 425 - -
Hepe05g1338 441 FunFam Non-specific serine/threonine protein kinase 1 304 - -
Hepe05g1338 441 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 376 424 IPR001772 -
Hepe05g1338 441 Gene3D Kinase associated domain 1, KA1 306 424 - -
Hepe05g1338 441 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Hepe05g1338 441 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Hepe05g1338 441 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Hepe05g1338 441 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1338 441 CDD CIPK_C 308 419 - -
Hepe05g1338 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe05g1338 441 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1338 441 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1338 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1338 441 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Hepe05g1338 441 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1338 Hepe-Chr5:61764598 Hepe07g1747 Hepe-Chr7:59864705 2.99e-147 dispersed
Hepe02g1784 Hepe-Chr2:25901475 Hepe05g1338 Hepe-Chr5:61764598 4.10e-17 wgd
Hepe03g0008 Hepe-Chr3:112109 Hepe05g1338 Hepe-Chr5:61764598 2.51e-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72824 PF00069 Pkinase 4.60E-71 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1338 K07198 - csv:101205987 792.727