Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1345 ATGGTGCTGAATGCCGGTGAAACCACCGGAAATGTTCGGAAAGGCCTCGGAATTTTCCTTTACATTCAAGCTATTGAAGACTGTACGGTTCTTGTTTGTTGTTACAAATGCCCATTATACTTCGGCTCAGTTAGATTGGTCAAGGAGATTAGTTGCAATTACCCAAGTGTTGTCCCAATGATGGCCGCTATTCGCTCCTCTGGATTTATTGATCCGGGTTGGGATCATGGAGTTGCTCAAGATGAAAAGAAGAAGAAGGTTAAATGCAATTACTGCGGGAAAATAGTTAGTGGTGGCATATATAGATTGAAGCAACATTTAGCTCGAGTTTCAGGAGAAGTTACTTATTGTGACCATGCTCCAGAGGAAGTATATTTGAGAATGAGAGAAAACCTGGAAGGTTGTCGTTCCAATAAGAAACCAAGGCAATCTGAAGATGATGAACAATCATATTTAAACTTCCATTCCAATGATGAAGAAGAAGATGGTTTACATGTGGCTTATAGAAATCGAGGAAGGCAACTGATGGGAAGCAGGAATATTGGTGCTAACACGACTCCTCTTAGGTCATTAAGATATGTTGACCCTGGGTGGGAACATGGCGTGGCTCAAGATGAAAGGAAGAAGAAGGTAAAATGCAACTACTGTGAAAAGATAGTTAGTGGAGGTATTAATAGGTTTAAGCAACATTTAGCCAGAATTCCTGGAGAGGTAGCTCCTTGTAAACATGCTCCTGAGGAAGTGTATCTTAAGATCAAAGAGAATATGAAATGGCATCGTACTGGTAGGAGACATGGACAAACTGATGCCAATGAAATATCAGCTTATTTTATGCAATCAGATAATGAGGAAGAAGAAGATGAGAAAGAGGAATCCCTTCATCATATTAGCAAGGAGAGATTGATCGATGGTGACAAAAGATTGAGCAAAGATTTGAGAAGTACTTTCAGGGGAATGTCCCCTGGTTGTGGATCTGAACCATCGGTTAAAAGATCAAGGTTAGATTCTGTTTTTCTGAAAACCACCAAAAGACAAACTGAACAGGTGCACAAACAAACATTAGTCAAAAGAGGGACCAATCGGAGGTCACGCAAAGAAGTGATGTCTGCAATTTGCAAATTCTTTTGCTATGCAGGAATTCCTTTTCAATCTGCAAATTCTGTTTACTTTCATAAGATGTTGGAGACAGTTGGTCAATATGGATCGGGCTTGGTTGGTCCTTCATGTCAACTAATATCTGGTCGGTTTTTACAGGAGGAAGTTGCAACCATTAAGACTTACCTGGTTGAGTTGAAGGCCTCTTGGGCAATTACTGGTTGTTCAATACTGGTAGACAGTTGGAAAGAATCAGATGGTAGGACATCTATGAACTTTTTGGTTTCTTGTCCCCGTGGTGTTTACTTTGTCTCTTCTTTCGATGCCACTGAAATAGTAGATGACCCATCAAACTTGTTTAGAGTGCTTGATGGAGTGGTAGATGAAATTGGAGAGGAAAATGTGGCGCAGGTAATCACTGAGAATACTCCCAATTATAAAGCTGCTGGTAAAATGCTTGAGGAGAAGAGAAGAAATTTATTCTGGACTCCATGTGCGACCTATTGTATTGATCACATGCTTGAAGATTTTTTAAAATTGAGATCCGTGGAAGATTGCATTGAAAAGTGCCAAAAAATTACTAAGTTTATTTACAATCGGAACTGGTTGTTAAATGTCATGAAGAACGAGTTCACCCAGGGGTTGGAACTTCTGAGACCTGCAGTTACTCGGAATGCCTCAAGCTTTGCTACTTTGCAGTGCTTGCTGGACCACAGAGCTAGTCTACGAAGAATGTTTGTCTCCAATGAATGGACTTCTTGTAGGTTTTCTCATTCTGGTGAGGGAAAAGAAGTAGAGATGATTGTATTAAATACTTCATTTTGGAAGAAGGTGCAATATGTTTGTAAATCTGTGGAACCAGTATTGCAAGTTCTTCAAAAAGTTGATTGTGTTGAAAGCTTGTCAATGTCATCTATATATAATGACATGTACAGAGCCAAGTTTTCTATAAAATCCATTCATGGTGATGATGCCAGGAAATATGGACCATTCTGGAATGTGATAGATAGCAACTGGAATTCTTTATTTTGCCACCCTTTACATATGGCTGCTTATTTCTTAAACCCATCATACAGATATCGTCCTGATTTTGTGGCGCATTCAGAGGTGGTTCGTGGACTTAATGAATGCATAGTTCGGCTAGAGTCCGACAATTCCAGAAGAATTTCTGCATCTATGCAGATTTCTGACTATAATTCAGCCAAGTCTGATTTTGGAACTGAGCTGGCTATTAGTACAAGAACAGAGCTTGATCCAGCTGCATGGTGGCAACAACATGGAATCAGTTGCTTAGAACTGCAACAAATAGCTGTTCGCGTACTGAGTCAGACATGTTCATCTTTGTGTTGTGAGCACAACTGGACCCCGTTCGATAAGGAACGCAGTCAAAGGCACAATTCTTTGTCTCAGAGAAAAATGGCTGATATGTTATATGTTCACTACAACCTGCGACTTCGAGAACGCCAACTAAGAAAGCGATCTAATGACTCTATTTCTCTTGATCATATTCTTATGGAACATTTATTGGATGAATGGATTGTGGAACCCCAGAAACAAGGCATGCAGGAAGATGAGGAAATCCTTTGTCCCAGACTGGAGCCACTCGATGCATATGAGAATGATTTGATCGACTATGAGGACGGGACTTCAGAGGGCCGGAAGGGCTGTCTTCAACTGGTTGGTTTGACTGATGTAGAAACATTGGATGTCAATCCCGCCAATGGAGGCGCTTCCACGGACAATGATGCTGATGTTAAGTTCTACGACGATGAGTTAAGTGACTAA 2880 40.62 MVLNAGETTGNVRKGLGIFLYIQAIEDCTVLVCCYKCPLYFGSVRLVKEISCNYPSVVPMMAAIRSSGFIDPGWDHGVAQDEKKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDHAPEEVYLRMRENLEGCRSNKKPRQSEDDEQSYLNFHSNDEEEDGLHVAYRNRGRQLMGSRNIGANTTPLRSLRYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKHAPEEVYLKIKENMKWHRTGRRHGQTDANEISAYFMQSDNEEEEDEKEESLHHISKERLIDGDKRLSKDLRSTFRGMSPGCGSEPSVKRSRLDSVFLKTTKRQTEQVHKQTLVKRGTNRRSRKEVMSAICKFFCYAGIPFQSANSVYFHKMLETVGQYGSGLVGPSCQLISGRFLQEEVATIKTYLVELKASWAITGCSILVDSWKESDGRTSMNFLVSCPRGVYFVSSFDATEIVDDPSNLFRVLDGVVDEIGEENVAQVITENTPNYKAAGKMLEEKRRNLFWTPCATYCIDHMLEDFLKLRSVEDCIEKCQKITKFIYNRNWLLNVMKNEFTQGLELLRPAVTRNASSFATLQCLLDHRASLRRMFVSNEWTSCRFSHSGEGKEVEMIVLNTSFWKKVQYVCKSVEPVLQVLQKVDCVESLSMSSIYNDMYRAKFSIKSIHGDDARKYGPFWNVIDSNWNSLFCHPLHMAAYFLNPSYRYRPDFVAHSEVVRGLNECIVRLESDNSRRISASMQISDYNSAKSDFGTELAISTRTELDPAAWWQQHGISCLELQQIAVRVLSQTCSSLCCEHNWTPFDKERSQRHNSLSQRKMADMLYVHYNLRLRERQLRKRSNDSISLDHILMEHLLDEWIVEPQKQGMQEDEEILCPRLEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVETLDVNPANGGASTDNDADVKFYDDELSD 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61859498 61865134 + Hsped.05g13450.1 Hepe05g1345 570610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1345 959 Pfam BED zinc finger 74 109 IPR003656 GO:0003677(InterPro)
Hepe05g1345 959 Pfam BED zinc finger 198 233 IPR003656 GO:0003677(InterPro)
Hepe05g1345 959 PANTHER OSJNBA0013A04.12 PROTEIN 192 889 - -
Hepe05g1345 959 ProSiteProfiles Zinc finger BED-type profile. 192 248 IPR003656 GO:0003677(InterPro)
Hepe05g1345 959 SUPERFAMILY Ribonuclease H-like 431 851 IPR012337 -
Hepe05g1345 959 ProSiteProfiles Zinc finger BED-type profile. 68 124 IPR003656 GO:0003677(InterPro)
Hepe05g1345 959 Pfam hAT family C-terminal dimerisation region 778 848 IPR008906 GO:0046983(InterPro)
Hepe05g1345 959 Pfam Protein of unknown function (DUF 659) 407 558 IPR007021 -
Hepe05g1345 959 MobiDBLite consensus disorder prediction 135 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1345 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3363 Hepe-Chr2:83188411 Hepe05g1345 Hepe-Chr5:61859498 7.64e-115 dispersed
Hepe05g1345 Hepe-Chr5:61859498 Hepe06g0798 Hepe-Chr6:54756873 5.26e-58 dispersed
Hepe05g1345 Hepe-Chr5:61859498 Hepe08g1874 Hepe-Chr8:47868354 2.43e-93 transposed
Hepe05g1345 Hepe-Chr5:61859498 Hepe06g0762 Hepe-Chr6:54150688 1.03e-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37