Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1350 ATGGCGACGGAGAGTTCTACGCAGGCCTACGGCGAGCCTTCGTATTGGGAGAATCGCTATTCCAACGAATCTGGACCCTTTGATTGGTACCAGAAGTATCACTCCTTAGCGCCATTGATCAATCTCTATGCCTCTCGCCATCATCGCATCCTCGCCGTCGGATGCGGCAACTCAGCATTTAGCGAAGGTATGGTCGATGATGGTTATGAGGATGTAGTCAATGTCGATATATCATCTGTTGTCATCGAAGCAATGCAGAAGAAGTATTGTAATCTTCCGCAGCTGAAATATGTGGAAATGGATGTTCGTGATATGAGTACATTTGAAACATGTTCTTTTGACACCGTTCTTGACAAAGGGACCCTAGACTCTCTATTGTGCGGAAATAATTCACGACACAATGCAACTAAGATGCTTGAAGAAGTCTGGAGGGTCCTCAAGAAAGATGGAGTATATATTTTGATTACATACGGAGCTCCCACGTATAGATTATGTCTACTAAGACGTACTTTCTCATTGATAAAGCTTCATGTCATAGAGAAGCTTGTTTCAGAGAGAAGGACTGACCCTCCAAAATGGGACCTGTTGAAACCTGTTCCATATGATAATGACGCGAGCTCGCTAGAAACCGTGCTCGGGCAGAATCCTGATGTCCACTATATATACGTCTGTACTAAGGATAGTTCTTTGAAACCAGACCAAAAGTATGATGTTGCTGTTGATGAGTGA 729 43.76 MATESSTQAYGEPSYWENRYSNESGPFDWYQKYHSLAPLINLYASRHHRILAVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMQKKYCNLPQLKYVEMDVRDMSTFETCSFDTVLDKGTLDSLLCGNNSRHNATKMLEEVWRVLKKDGVYILITYGAPTYRLCLLRRTFSLIKLHVIEKLVSERRTDPPKWDLLKPVPYDNDASSLETVLGQNPDVHYIYVCTKDSSLKPDQKYDVAVDE 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 61916755 61920465 + Hsped.05g13500.1 Hepe05g1350 570615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1350 242 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 174 IPR029063 -
Hepe05g1350 242 Pfam Methyltransferase domain 51 153 IPR013216 GO:0008757(InterPro)
Hepe05g1350 242 Gene3D Vaccinia Virus protein VP39 8 240 IPR029063 -
Hepe05g1350 242 CDD AdoMet_MTases 49 157 - -
Hepe05g1350 242 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 6 229 IPR051419 -
Hepe05g1350 242 FunFam S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 8 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0546 Hepe-Chr2:5515535 Hepe05g1350 Hepe-Chr5:61916755 1.58e-28 dispersed
Hepe03g1778 Hepe-Chr3:74682046 Hepe05g1350 Hepe-Chr5:61916755 2.55e-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g246 . . . . . . . . . . . Cma14g01563 . Car14g01380 Sed02g1116 . Cpe03g01308 Bhi01g01121 Tan10g1110 Cmetu06g2692 . Hepe05g1350 . Lcy11g1311 . . . . . . . . . . . Lsi05g01392 . . Cme06g00825 . . . . . . . . . . Cmo14g01599 . . Car08g01105 . Cpe12g00279 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007366 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 35