Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1374 ATGGTTTCTAGTAATCGAGCGACGCATTCGCATCATCAACAACAACAGCAACAACAACAACAAGCACAGTCCTCGAACACGAACACGAACACGAACGCGAGTAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCCATAGCTCAGTACACGGCTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAGGATTCAAAGGGGCGGTCATATCCAGCCCTTTGGATGTATGATAGCCTTAGATGAGGCTAGTTTTCGGGTTATTTCGTACAGTGAGAACGCTAGAGAATTGCTCGGTCTTACGCCGCAATCAGTGCCGAGCCTCGAAAAGCCTGAGATCCTCACGATTGGGACTGATATACGGAAGTTGTTCACTTCCAATAGTTCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTCTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTACGCTATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCACTTTCTATTGCTGGAGCGGTCCAATCGCAGAAGCTTGCGGTACGAGCAATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTCTGGCTGAAAGTAAGAGACCAGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATTGTCGATTGCCACGCTTCTCCAGTTCGTGTAATTCAAGATGCAGGGCTTATGCAACCTCTCTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCTGTTGTTATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACGAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCACGGTGTATTCCGTTCCCGCTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGACTTCAGCTGAATATGGAATTGCAGTTGGCTTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTATGCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCGCTCGGTGTGTCGCCAACTGAAGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCTAGGGGCAGCCTTGCTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACAAAAAGGGATTTTCTATTTTGGTTCCGATCACACACAGCTAAAGAGGTCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAGGACGATGTGGCAATCAATTTGAAGGCAGTTGGGGACCCTCAACTAGAACTTGACTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCCTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTAGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTATAAAGAATCTGAAGAAACAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAAGACATTTGGGCCAGAAGATCAAAAGACGCCGATTTTTGTGGTTGTTAATGCTTGCTCTAGCAGGGACCACACTGATAATATAGTAGGCGTTTGTTTTGTTGGTCAAGATGTTACATCCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGGTGGTCCAGAGAGGAAATAATTGGGAAACTGTTAGTAGGAGAGATTTTCGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCCAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCTAGGATGAAAGAGCTGACTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGCGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAACAGATGTTAAAGATTATAGAAGATATGAATTTGGAAAGTATTGATGATGGTACAATGGAGCTCGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTGAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAGCTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTGCGTTACGCACCCTCTCCGGAAGGTTGGGTAGAAATACGCGTCTGTCCATTCCTGAAGCAAAGCTCAGATGGACTTCCTCTCGCTCACACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTTTGAAGCTCATGAATGGCGAGGTCCAATACATCAGAGAATCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTACCCTTGACAGAGAGAGGCGTAAGCGATGACGGTTAG 3426 43.99 MVSSNRATHSHHQQQQQQQQQAQSSNTNTNTNASNLRSHRTDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSRIQRGGHIQPFGCMIALDEASFRVISYSENARELLGLTPQSVPSLEKPEILTIGTDIRKLFTSNSSILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVLAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVMQSPSIMDLVKCDGAALYYQGKYYPLGVSPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYLGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINLKAVGDPQLELDLQGIDELSSVAREMVRLIETATAPILAVDVDGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVEIKMKTFGPEDQKTPIFVVVNACSSRDHTDNIVGVCFVGQDVTSQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREEIIGKLLVGEIFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELTYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMNLESIDDGTMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQSSDGLPLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGVSDDG 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62514273 62519643 - Hsped.05g13740.1 Hepe05g1374 570639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1374 1141 Pfam PAS fold 766 885 IPR013767 GO:0006355(InterPro)
Hepe05g1374 1141 Pfam PAS fold 635 750 IPR013767 GO:0006355(InterPro)
Hepe05g1374 1141 Gene3D - 221 579 IPR029016 -
Hepe05g1374 1141 CDD PAS 777 885 IPR000014 -
Hepe05g1374 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 746 IPR035965 -
Hepe05g1374 1141 SMART pas_2 765 835 IPR000014 -
Hepe05g1374 1141 SMART pas_2 634 701 IPR000014 -
Hepe05g1374 1141 FunFam Phytochrome 423 553 - -
Hepe05g1374 1141 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 240 408 IPR016132 -
Hepe05g1374 1141 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 895 964 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe05g1374 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 780 884 IPR035965 -
Hepe05g1374 1141 Gene3D PAS domain 779 887 - -
Hepe05g1374 1141 FunFam Phytochrome 628 760 - -
Hepe05g1374 1141 ProSiteProfiles PAS repeat profile. 766 818 IPR000014 -
Hepe05g1374 1141 Gene3D PAS domain 95 343 - -
Hepe05g1374 1141 SUPERFAMILY GAF domain-like 426 603 - -
Hepe05g1374 1141 CDD HATPase_Phy-like 1018 1130 IPR044767 -
Hepe05g1374 1141 Gene3D - 423 596 IPR043150 -
Hepe05g1374 1141 Gene3D PAS domain 630 754 - -
Hepe05g1374 1141 NCBIfam PAS domain S-box protein 639 754 IPR000014 -
Hepe05g1374 1141 PRINTS Phytochrome signature 728 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 255 274 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 533 552 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 566 584 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 448 468 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 748 768 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 155 177 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 654 669 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 340 361 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 PRINTS Phytochrome signature 635 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 Pfam Phytochrome region 431 604 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe05g1374 1141 SUPERFAMILY GAF domain-like 220 415 - -
Hepe05g1374 1141 CDD PAS 643 750 IPR000014 -
Hepe05g1374 1141 MobiDBLite consensus disorder prediction 1 40 - -
Hepe05g1374 1141 PIRSF Phytochrome_conventional 23 1139 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe05g1374 1141 ProSitePatterns Phytochrome chromophore attachment site signature. 340 349 IPR013516 -
Hepe05g1374 1141 ProSiteProfiles Histidine kinase domain profile. 914 1134 IPR005467 -
Hepe05g1374 1141 SMART HisKA_10 907 971 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe05g1374 1141 CDD HisKA 907 963 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe05g1374 1141 Gene3D - 888 969 - -
Hepe05g1374 1141 FunFam Phytochrome 779 887 - -
Hepe05g1374 1141 Pfam GAF domain 241 418 IPR003018 GO:0005515(InterPro)
Hepe05g1374 1141 Gene3D - 970 1136 IPR036890 -
Hepe05g1374 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 982 1131 IPR036890 -
Hepe05g1374 1141 SMART HKATPase_4 1019 1134 IPR003594 -
Hepe05g1374 1141 Pfam His Kinase A (phospho-acceptor) domain 909 971 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe05g1374 1141 Pfam PAS fold 91 207 IPR013654 GO:0006355(InterPro)
Hepe05g1374 1141 ProSiteProfiles PAS repeat profile. 632 703 IPR000014 -
Hepe05g1374 1141 FunFam Phytochrome 888 969 - -
Hepe05g1374 1141 PANTHER OS08G0260000 PROTEIN 31 1011 - -
Hepe05g1374 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1019 1132 IPR003594 -
Hepe05g1374 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 96 210 IPR035965 -
Hepe05g1374 1141 SMART gaf_1 240 428 IPR003018 GO:0005515(InterPro)
Hepe05g1374 1141 FunFam Phytochrome 970 1136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1374 K12121 - - csv:101212197 2115.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1374 Hepe-Chr5:62514273 Hepe07g1806 Hepe-Chr7:60786622 0.0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42