Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g1374 | ATGGTTTCTAGTAATCGAGCGACGCATTCGCATCATCAACAACAACAGCAACAACAACAACAAGCACAGTCCTCGAACACGAACACGAACACGAACGCGAGTAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCCATAGCTCAGTACACGGCTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGTAAATCTTTTGACTACTCACAATCTATTAGAACTTCGACGCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAGGATTCAAAGGGGCGGTCATATCCAGCCCTTTGGATGTATGATAGCCTTAGATGAGGCTAGTTTTCGGGTTATTTCGTACAGTGAGAACGCTAGAGAATTGCTCGGTCTTACGCCGCAATCAGTGCCGAGCCTCGAAAAGCCTGAGATCCTCACGATTGGGACTGATATACGGAAGTTGTTCACTTCCAATAGTTCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTCTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTACGCTATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCACTTTCTATTGCTGGAGCGGTCCAATCGCAGAAGCTTGCGGTACGAGCAATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTCTGGCTGAAAGTAAGAGACCAGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCGAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATTGTCGATTGCCACGCTTCTCCAGTTCGTGTAATTCAAGATGCAGGGCTTATGCAACCTCTCTGCTTAGTGGGTTCGACTCTTCGTGCTCCCCATGGCTGTCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCATTAGCAATGGCTGTTGTTATCAATGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACGAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCACGGTGTATTCCGTTCCCGCTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGACTTCAGCTGAATATGGAATTGCAGTTGGCTTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTATGCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCGCTCGGTGTGTCGCCAACTGAAGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCTAGGGGCAGCCTTGCTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACAAAAAGGGATTTTCTATTTTGGTTCCGATCACACACAGCTAAAGAGGTCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAGGACGATGTGGCAATCAATTTGAAGGCAGTTGGGGACCCTCAACTAGAACTTGACTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCCTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTAGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTATAAAGAATCTGAAGAAACAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAAGACATTTGGGCCAGAAGATCAAAAGACGCCGATTTTTGTGGTTGTTAATGCTTGCTCTAGCAGGGACCACACTGATAATATAGTAGGCGTTTGTTTTGTTGGTCAAGATGTTACATCCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGGTGGTCCAGAGAGGAAATAATTGGGAAACTGTTAGTAGGAGAGATTTTCGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAGGCTCTCTTGACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCCAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCTAGGATGAAAGAGCTGACTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGCGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAACAGATGTTAAAGATTATAGAAGATATGAATTTGGAAAGTATTGATGATGGTACAATGGAGCTCGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTGAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAGCTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTGCGTTACGCACCCTCTCCGGAAGGTTGGGTAGAAATACGCGTCTGTCCATTCCTGAAGCAAAGCTCAGATGGACTTCCTCTCGCTCACACCGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTTTGAAGCTCATGAATGGCGAGGTCCAATACATCAGAGAATCTGAAAGGTGTTATTTCTTGATCACTCTTGAACTACCCTTGACAGAGAGAGGCGTAAGCGATGACGGTTAG | 3426 | 43.99 | MVSSNRATHSHHQQQQQQQQQAQSSNTNTNTNASNLRSHRTDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSRIQRGGHIQPFGCMIALDEASFRVISYSENARELLGLTPQSVPSLEKPEILTIGTDIRKLFTSNSSILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVLAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVMQSPSIMDLVKCDGAALYYQGKYYPLGVSPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYLGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINLKAVGDPQLELDLQGIDELSSVAREMVRLIETATAPILAVDVDGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVEIKMKTFGPEDQKTPIFVVVNACSSRDHTDNIVGVCFVGQDVTSQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREEIIGKLLVGEIFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELTYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMNLESIDDGTMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQSSDGLPLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGVSDDG | 1141 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 62514273 | 62519643 | - | Hsped.05g13740.1 | Hepe05g1374 | 570639 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g1374 | 1141 | Pfam | PAS fold | 766 | 885 | IPR013767 | GO:0006355(InterPro) | |
| Hepe05g1374 | 1141 | Pfam | PAS fold | 635 | 750 | IPR013767 | GO:0006355(InterPro) | |
| Hepe05g1374 | 1141 | Gene3D | - | 221 | 579 | IPR029016 | - | |
| Hepe05g1374 | 1141 | CDD | PAS | 777 | 885 | IPR000014 | - | |
| Hepe05g1374 | 1141 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 637 | 746 | IPR035965 | - | |
| Hepe05g1374 | 1141 | SMART | pas_2 | 765 | 835 | IPR000014 | - | |
| Hepe05g1374 | 1141 | SMART | pas_2 | 634 | 701 | IPR000014 | - | |
| Hepe05g1374 | 1141 | FunFam | Phytochrome | 423 | 553 | - | - | |
| Hepe05g1374 | 1141 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 240 | 408 | IPR016132 | - | |
| Hepe05g1374 | 1141 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 895 | 964 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe05g1374 | 1141 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 780 | 884 | IPR035965 | - | |
| Hepe05g1374 | 1141 | Gene3D | PAS domain | 779 | 887 | - | - | |
| Hepe05g1374 | 1141 | FunFam | Phytochrome | 628 | 760 | - | - | |
| Hepe05g1374 | 1141 | ProSiteProfiles | PAS repeat profile. | 766 | 818 | IPR000014 | - | |
| Hepe05g1374 | 1141 | Gene3D | PAS domain | 95 | 343 | - | - | |
| Hepe05g1374 | 1141 | SUPERFAMILY | GAF domain-like | 426 | 603 | - | - | |
| Hepe05g1374 | 1141 | CDD | HATPase_Phy-like | 1018 | 1130 | IPR044767 | - | |
| Hepe05g1374 | 1141 | Gene3D | - | 423 | 596 | IPR043150 | - | |
| Hepe05g1374 | 1141 | Gene3D | PAS domain | 630 | 754 | - | - | |
| Hepe05g1374 | 1141 | NCBIfam | PAS domain S-box protein | 639 | 754 | IPR000014 | - | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 728 | 745 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 255 | 274 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 533 | 552 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 566 | 584 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 448 | 468 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 748 | 768 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 155 | 177 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 654 | 669 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 340 | 361 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | PRINTS | Phytochrome signature | 635 | 651 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | Pfam | Phytochrome region | 431 | 604 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe05g1374 | 1141 | SUPERFAMILY | GAF domain-like | 220 | 415 | - | - | |
| Hepe05g1374 | 1141 | CDD | PAS | 643 | 750 | IPR000014 | - | |
| Hepe05g1374 | 1141 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Hepe05g1374 | 1141 | PIRSF | Phytochrome_conventional | 23 | 1139 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Hepe05g1374 | 1141 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 340 | 349 | IPR013516 | - | |
| Hepe05g1374 | 1141 | ProSiteProfiles | Histidine kinase domain profile. | 914 | 1134 | IPR005467 | - | |
| Hepe05g1374 | 1141 | SMART | HisKA_10 | 907 | 971 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe05g1374 | 1141 | CDD | HisKA | 907 | 963 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe05g1374 | 1141 | Gene3D | - | 888 | 969 | - | - | |
| Hepe05g1374 | 1141 | FunFam | Phytochrome | 779 | 887 | - | - | |
| Hepe05g1374 | 1141 | Pfam | GAF domain | 241 | 418 | IPR003018 | GO:0005515(InterPro) | |
| Hepe05g1374 | 1141 | Gene3D | - | 970 | 1136 | IPR036890 | - | |
| Hepe05g1374 | 1141 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 982 | 1131 | IPR036890 | - | |
| Hepe05g1374 | 1141 | SMART | HKATPase_4 | 1019 | 1134 | IPR003594 | - | |
| Hepe05g1374 | 1141 | Pfam | His Kinase A (phospho-acceptor) domain | 909 | 971 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe05g1374 | 1141 | Pfam | PAS fold | 91 | 207 | IPR013654 | GO:0006355(InterPro) | |
| Hepe05g1374 | 1141 | ProSiteProfiles | PAS repeat profile. | 632 | 703 | IPR000014 | - | |
| Hepe05g1374 | 1141 | FunFam | Phytochrome | 888 | 969 | - | - | |
| Hepe05g1374 | 1141 | PANTHER | OS08G0260000 PROTEIN | 31 | 1011 | - | - | |
| Hepe05g1374 | 1141 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1019 | 1132 | IPR003594 | - | |
| Hepe05g1374 | 1141 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 96 | 210 | IPR035965 | - | |
| Hepe05g1374 | 1141 | SMART | gaf_1 | 240 | 428 | IPR003018 | GO:0005515(InterPro) | |
| Hepe05g1374 | 1141 | FunFam | Phytochrome | 970 | 1136 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe05g1374 | Hepe-Chr5:62514273 | Hepe07g1806 | Hepe-Chr7:60786622 | 0.0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g1374 | K12121 | - | csv:101212197 | 2115.89 |