Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1383 ATGCAAATCTTCTCTTCTTCTCCTTCAACGACGAGCTTCAATCTCTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAATCTCTATTATGCCCCTCCATTCCGTCCAGTCGTGCTGTTCTTCGAGGGAGTCCTCGACGGTGGTTCTCGTCGCCGATCGATCGTCGGATGGCGCGTACTTAGAGGCGTCGGAGGAGGTTCTTAAGGTACGGCGGCCGGTTAAGGGGTTTTCCGGCGACGGCGAGGAAGAGGAAACGGAAATTGAGATGAGAAGTTCGATGATTGATGTAGGGCTAACGGAGATTGCGAAGAAGATGCCGATTTTTGAACCGGAGAATCGGGTGGATTCTAGTGCCCTAGAAAGGCCGTTGATTATCAATTTGGATTTGGCGTTGTACAGAGCCAAGATGTTGGCGAGGAATTTTCAGTATGATGAAGCACAGAAAGTTCTTCGGAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGACGCTGAGCAAGCAAATGAAAGCAGCTGAAGCCAGAGCTGTGTACGAGAGAGGCTGCCAAGCCACCCAAGGAGAAAACTCCTACGTTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAACATAAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAAGGCAACATCAAGAAGGCCAGGAATTTACTAGCCAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATCTATCAAACACTTGCGCTACTCGAAGCCAAATCGAATCGGTACGAGCAGGCTCGTTATTTGTTTAAGCAGGGTACCAAGTGCAACCCCAAGAGCTGTGCTTGTTGGCTTGCATGGGCTCAGCTGGAGATGCAGCTGGAGAACAACCTTCTTGCTAGACAACTATTTGAGAAAGCCATTCAGGCCAGCCCCAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCTAATATGGGAAATATAGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAGGCCTTGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGATCCAAAGCACCAACCTGTGTGGATTGCATGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAAGCGAGGGAGCTATATCAAAGAGCATTGTTAATTGACTCGGCTAGCGAGAGCGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTGGAACAGAGAGCAGGCAATCTATCAGCAGCAAGAAGATTATATAGATCCTCTCTAAACATAAATTCTCAGAGTTACATTACATGGATGACATGGGCAGCATTGGAAGAGGATCAAGGGAATGCGATTCGAGCCGAGGAAATTCGAAATCTCTATTTCCAGCAGAGAACCGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATTGACCCAGCAATGGACAGCATAAAGAGACTGTTGAAGCTGGAGCAAGATCCATTCACAATGTCTCAAGCAGCGGATGGAGGCACTCGAAACGCCTCGGTAGACTCGGCTGCCTCCTCTTCTAGTAACAATGTGGTTGAAAGTGAAACTGGGTTTGATTTGGATGCCTTTATCATGAAAAAGTTGTCTGTAGACACATCAAAACTCGAAATTCAGCTTGAAACAACTCGACCCAAAAGATTCAAGTATCAAAGAAAGTCGTTGAAATCAGAAAACAGACAAGAAATGGCTGTTTCACCGAGCCAAAGATCGGCATCATCATCGGGTTAA 1896 46.94 MQIFSSSPSTTSFNLFSSSQNPNNLSKYRCKISIMPLHSVQSCCSSRESSTVVLVADRSSDGAYLEASEEVLKVRRPVKGFSGDGEEEETEIEMRSSMIDVGLTEIAKKMPIFEPENRVDSSALERPLIINLDLALYRAKMLARNFQYDEAQKVLRKCIDKWPEDGRAYVALGKTLSKQMKAAEARAVYERGCQATQGENSYVWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQGTKCNPKSCACWLAWAQLEMQLENNLLARQLFEKAIQASPKNRFAWHIWGLFEANMGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSAGLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLNINSQSYITWMTWAALEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPAMDSIKRLLKLEQDPFTMSQAADGGTRNASVDSAASSSSNNVVESETGFDLDAFIMKKLSVDTSKLEIQLETTRPKRFKYQRKSLKSENRQEMAVSPSQRSASSSG 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62586414 62595562 + Hsped.05g13830.1 Hepe05g1383 570648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1383 631 Pfam Tetratricopeptide repeat 133 174 - -
Hepe05g1383 631 SUPERFAMILY TPR-like 145 381 IPR011990 GO:0005515(InterPro)
Hepe05g1383 631 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 6 614 IPR044624 GO:0003727(PANTHER)|GO:0003729(InterPro)|GO:0006397(InterPro)|GO:0006397(PANTHER)|GO:0006417(PANTHER)|GO:0009507(PANTHER)
Hepe05g1383 631 SMART hat_new_1 317 349 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 419 454 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 351 383 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 180 213 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 249 281 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 456 488 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 215 247 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 385 417 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 SMART hat_new_1 283 315 IPR003107 GO:0006396(InterPro)
Hepe05g1383 631 Gene3D Tetratricopeptide repeat domain 130 202 IPR011990 GO:0005515(InterPro)
Hepe05g1383 631 FunFam High chlorophyll fluorescent 107 123 332 - -
Hepe05g1383 631 MobiDBLite consensus disorder prediction 615 631 - -
Hepe05g1383 631 SUPERFAMILY TPR-like 334 504 IPR011990 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 132 165 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 201 234 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 235 268 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 166 199 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 303 336 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 371 404 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 269 302 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 405 438 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 SMART tpr_5 442 475 IPR019734 GO:0005515(InterPro)
Hepe05g1383 631 MobiDBLite consensus disorder prediction 545 564 - -
Hepe05g1383 631 MobiDBLite consensus disorder prediction 604 631 - -
Hepe05g1383 631 Gene3D Tetratricopeptide repeat domain 203 506 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1383 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30