Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1388 ATGACATCTTGTAAAGAAAGAGCATCTGTCAACGCCCCTGAAATTGCGTTGCGCCATTTCTTCTTCATTCCTCTGTTGTTCATAAAAAAGCTTCCCCCAACATTCATTCATTCATTCATACAGAAAAGTGAAGAAGAAGAAGCAAAGCAAAAAATGGACGGTGAACGGAGAGTTGGAGTGGCGGTGGATTTCTCGACCTGCAGCAGAAAAGCACTCAGATGGGCTATTGACAACATTATCCGTAAGGGCGATTTCCTTGTTCTCATCACCGTTCGTCCCGATAACGATTACGAAGACGGCGAGATGCAGCTCTGGCAAACCACCGGATCTCCGCTAATTCCTCTGGTTGAGTTTGCCGATCCTCACACCGTGAAGAAGTACGGGGTTAAGCCTGATGCTGAAACTCTGGACATTGTGACGACTGCAGCCGCGCAGAAGGAGATCATTGTGTTGCTCAAGATTTATTGGGGAGATGCTCGTGAGAAGCTTTGTGAAGCAATTGATCACATTCCTCTTAGCTCTCTTGTTATTGGGAACAGAGGTCTTGGCAAGCTTAAGAGGGTCATATTGGGCAGTGTAAGCAACTATGTGGTGAACAATGGTGCATGTCCAGTCACTGTAGTGAAGAAATTAGATCATGAGAACTGA 648 45.83 MTSCKERASVNAPEIALRHFFFIPLLFIKKLPPTFIHSFIQKSEEEEAKQKMDGERRVGVAVDFSTCSRKALRWAIDNIIRKGDFLVLITVRPDNDYEDGEMQLWQTTGSPLIPLVEFADPHTVKKYGVKPDAETLDIVTTAAAQKEIIVLLKIYWGDAREKLCEAIDHIPLSSLVIGNRGLGKLKRVILGSVSNYVVNNGACPVTVVKKLDHEN 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62639720 62643144 + Hsped.05g13880.1 Hepe05g1388 570653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1388 215 FunFam Universal stress protein family protein 52 212 - -
Hepe05g1388 215 PRINTS Universal stress protein signature 169 181 IPR006015 -
Hepe05g1388 215 PRINTS Universal stress protein signature 55 73 IPR006015 -
Hepe05g1388 215 PRINTS Universal stress protein signature 187 209 IPR006015 -
Hepe05g1388 215 PANTHER IMP2'P 52 212 - -
Hepe05g1388 215 CDD USP_Like 57 208 - -
Hepe05g1388 215 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 56 209 - -
Hepe05g1388 215 Gene3D HUPs 43 215 IPR014729 -
Hepe05g1388 215 Pfam Universal stress protein family 56 209 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1388 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0133 Hepe-Chr5:1530743 Hepe05g1388 Hepe-Chr5:62639720 1.97e-57 dispersed
Hepe05g1388 Hepe-Chr5:62639720 Hepe10g0418 Hepe-Chr10:4655756 1.18e-15 dispersed
Hepe05g1388 Hepe-Chr5:62639720 Hepe05g1442 Hepe-Chr5:63704727 9.08e-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008854 3 1 1 1 2 1 2 1 1 1 1 1 0 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34