Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1390 ATGACTAACATGGCTCTTCGAAAGTTTGTCTGTGGTGATACACCTTCCATTAACTTGAAACCTTCAAGTATCCCAGTTAAGGTGCATGGGCAAACTCAATTTGAAGAACCTGAGCCTAATCGGACGTTGGAGCCTGATGTAGAAATTGACAATAGAGAAGTTTATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCGTAGAACTTGTGGGCTGCTATGGGATGAGCTTTTCGAACATCAGCTTTTACCCCGACGATATCATGCTTGGTATTCAAGAAATGGGATGCATAGTGGGCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTTGAGAGGTATCCACACGTCGATAAGGATCACTTGATAAAACTTTTGAAGCAATTGATGCTTAACAAGGCCCCCCCATCTAGAGGTATGAATGGTGGAATTGCTCCAAATGCAGCTGACGTGCCTACATTATTGGGAACGGGCACGTTTTCACTTCTGAGTTATGATAAGCATGAAGGAGTTGGCAAGCCAAGTGGTCCACCAACACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCGCCCGACAGCAACGTGCACCTTCTGTGCGTGCAGCATGTTATGCCATTGCTAAGCCATCAATAATGGTGCAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGGAATGCTGTCTATTGTGCAATTTTTGATCGCTTGGGAAGGTATGTTATAACTGGCTCAGATGATCGCCTTGTAAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGCCGAGGACATGAGGGTGATATTACTGACCTGGCTGTAAGTTCTAACAATGCTGTGGTGGCATCGGCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCCAGAGCTGCATATCAGCTTCTTTCATCGTCCGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAGGCCTTTGGACTCTGTGACTGCAAGAAATGGTGGCTCTTCCGCGAGTACTCTTCCTCAGAGCCATCAAATATTTTGTTGTGCATTTAATGCTTGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTAGCAAGGGTTTGGAGTGCTTGTAAAGGAAACAATGATAACCTAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGTCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCAAGATTTACAACAACTGACATTGGGAAGGAAGACAATGTTCACAAGTTTAAAAACTCCTGGTTCACTTATGACAATATAGTTACTTGTTCTCGTGATGGCAGTGCAATTATTTGGGTTCCAAGATCACGGAGATCACATGGGAAGGTTGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCTCCACAGCCTGCTCGAGGCGGCCCTCGTCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGTTTCGTCTTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTGCACTCTTTGACAGGTCATACTGAATCTACGTATGTACTCGATGTTCATCCTTTTAATCCAAGGATTGCTATGAGTGCTGGATATGATGGAAAAACAATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCATTTCAAACTGGTGGATGGGAAGTTTTCATCAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAAGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAGTTGACCAGGAAACCCAACTCAGTACTTACAGGCGGAATTTGCAAGATCTCCTTTCCGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAGAGACGTTTAGGTGCTATGAGTGTTGAGTGGCGTCCCTCTTCTCTAAAGCTTTCTGTTGGGCCTGACTTCAATCTCGACCCAGAGTACCAATTGCTGCCTTTGGTTGACTTGGACATGTTGATTGAACCATTGCCTGAGATTGTAGATGCGATGGATTGGGGACCAGAAAATGAAGTACAAAGCGACGATACTGATTCCGAATACAACGTCCCTGAAGATTATTCTACTGGTGGGGAGCAAAGAAGTCTAAATTCTAACTGCTCAACTGATCCAGAATGCAGCTCTGAAGATACAGGTATTGACGATGCTCCTGCAGATGGTCTTCGAAGATCAAAAAGAAAAAAACAGAAAGCAGACATTGAGGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGGAATATGGATGAGTATGAAGGTGATACCGTTAGGAGTTCCAGAAGTCGGAAGTCAAAATCTGGCCATAAGCATTCCAAAAAGAAATCAACATCTAAGTCGTTAAGACCGCAAAGAGCTGCTGCACGTAATGCCCGTAATTGGATATCATCATTTAAGGGCAAATCTACAGATGGAGAAGATGAATACGAGTCAGGAGGTGATTGCTCAGAAAGTGAATCTACATTACAAGATTCAGACATTGAGATTGAGAGTGATGAATATGAAAGGTCGTTGCAAAACCGAAATAAGCATTCAAAAGGGAAAGAAGTATTCCTAGATGGAACCGAGGAGGTTGCAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATGCTGGAAACAGAAAGAAGTTGATCCTTAAATTCTCCCTTAAGAATCCAAATAAGGTTAATCCTCCTTCAAACACCATACTTACTTGTTCTAACATGGCTGATGTGGCTAGCTCATCATCAAGATCACCAAAGGAAGTTATTGAAACATGTCAGAATCTTATGAGTTCAGAGAGGCAATTTGGAAATACTGATGGACATTCTGATCTGACCGAGGTCTACACAAATGGGAACATAAGATGGGGAGGGTCCAGGGTCCGTACGTCCAAGCGCATAAGATTTGGAGACACCATGCCTTTTGATGCATATGCAATGTCTAGTTCATTTCCCAATGGTGATCATAATGAAAATGAGAATACTGTTCATGAATATTTAGAACGAGAAAATCATTCTGGTGCACCATCCCCCCATTCTAAGATACAGAATTGTGCAGATGAAATGGACGCAGTATCCCCTACGAATTTAATAGACGAGGATGATAATGCTTCTGGGCATTCTCAGGAGGTGGTCAATGGTGGGGAGCATAAATGTGTTAGCAACAGCAAGTCATGTGATCATGATGATTCAAATCATTTGAATTTCATGTTTCCTTCAGATGCAACTACTACATCAATACAAAATGGAACTCCTGCTCCTGAGCAAACTGAAAAGATTGCACCAATACGTACAAAGATAAGGTTGAAGAGTTTTTCTTTGGATCCTGAACATTCTTTGAAACACAAAATAGAATCCTTCGATGAAATCTCGAAGAATGATGAATACAATACTGTATCCAGAAACCCTCGGTATCTAAATGGACTGCAGGATAATGTCATGAATGGAACTTATTCTGATCATAGAAATGATTGCCATCAAGAAACGGACATTGCGGTCGATGAAAAACCAATGTCAACCTTATGCAACTCATCAGAGCTGCAAGCAGTAGAGACAAACAAAATGTACACTGCTGTTTATAGAAGATCTAAGTCAAACAAAGGAAAGAGCAATATAGAAAGTAACGGTTGTAGCTCAGGAGAAAATGTTTTGGGCAACAATAGTCTACCTGCTGAAGCAGACAATGACAGAAGTATGCTTCGGAAGACACGATCTTTAAGGTTTAAGGATTCCTCATATGATCTAAATAATGTGGGTGATGATCTAAAATCGGACGAAGATCAAGAACCTGAACAGAAATCAAGACGTTCTGGAAACTCTTCTGCGAGCAGATCCCATATACCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTAGTTTAACTCAAGACATAAATCCAGTAGACAGAAGAAAGTCGGTTCAATATGCCAGAAAAGGATCGTGGTTAATGATGCCTGCCCATGAGGGTGGCTCCAGATATATTCCCCAACTTGGAGATGAAGTTGCGTATCTGAGACAGGGCCATCAGGAATACATAGATCACTGTTGTGCAAATTACTGTCTCACTAAAGACACGGGACCTTGGACCTTAATTCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTATGGAGCTTGATTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCGAGTTCATAGATCCTACTTCCCATGTATACCTCCTATCTTTCAAGTTAACTCTTCCCGAGTTGACTAGTTTCCCAGACTTCTTAGTTGAAAGAACTCGATTTGAAGCAGCAATGCAGAGGAATTGGACATTCAGGGACAAGTGCAAAGTGTGGTGGAAAAATGACGTTGGAGTAGACGGTAGTTGGTGGGACGGTCGGATTGTCTCTGTGCAGGCAAAATCTTCAGAGTTTCCAGAAAGTCCTTGGGAGAGGTACACAATTAAGTATAGGAGTGATCCTGCAGAACCACATTTACATAGTCCTTGGGAGCTTTATGATACTGTTACTCAGTGGCAACAGCCTCGAATAGATGATGAGAACAAAGCAAAGTTGTTAACTGCCTTCGATAAATTAATGTCGACGTCTACGCAGGGTCGTTATGGGATTCAAGATTTGATGCTTCTCTCACGGAAGACACAATTCAAGAACAGGTTTCCTGTACCATTGTGCCTCGAGACAATCCAGGAAAGATTACAGAATGATTACTACCGAAGCTTAGAAGCTTTGAGGCATGACTTCATGGTAATGCTATCGAATTTTGAGTCATTCGTGGCAAAGAATGAAGACATGTCGAAGAAAATTAGACGGTTGTCGGACTGGTTTTCTCGCAATATATTACCTTTATAG 5193 42.21 MTNMALRKFVCGDTPSINLKPSSIPVKVHGQTQFEEPEPNRTLEPDVEIDNREVYFLIMHFLSSGPCRRTCGLLWDELFEHQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKDHLIKLLKQLMLNKAPPSRGMNGGIAPNAADVPTLLGTGTFSLLSYDKHEGVGKPSGPPTHMRWPHMKADSVRGLSLREIGGGFARQQRAPSVRAACYAIAKPSIMVQKMQNIKRLRGHRNAVYCAIFDRLGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASASNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPRPLDSVTARNGGSSASTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNLDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDIGKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVVDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPEYQLLPLVDLDMLIEPLPEIVDAMDWGPENEVQSDDTDSEYNVPEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADIEVMTSSGRRVKRRNMDEYEGDTVRSSRSRKSKSGHKHSKKKSTSKSLRPQRAAARNARNWISSFKGKSTDGEDEYESGGDCSESESTLQDSDIEIESDEYERSLQNRNKHSKGKEVFLDGTEEVAKSLDVPESRVDAGNRKKLILKFSLKNPNKVNPPSNTILTCSNMADVASSSSRSPKEVIETCQNLMSSERQFGNTDGHSDLTEVYTNGNIRWGGSRVRTSKRIRFGDTMPFDAYAMSSSFPNGDHNENENTVHEYLERENHSGAPSPHSKIQNCADEMDAVSPTNLIDEDDNASGHSQEVVNGGEHKCVSNSKSCDHDDSNHLNFMFPSDATTTSIQNGTPAPEQTEKIAPIRTKIRLKSFSLDPEHSLKHKIESFDEISKNDEYNTVSRNPRYLNGLQDNVMNGTYSDHRNDCHQETDIAVDEKPMSTLCNSSELQAVETNKMYTAVYRRSKSNKGKSNIESNGCSSGENVLGNNSLPAEADNDRSMLRKTRSLRFKDSSYDLNNVGDDLKSDEDQEPEQKSRRSGNSSASRSHIPSEEWGSSSRMTVGSRSTRNRRGSLTQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIDHCCANYCLTKDTGPWTLIRGTIRAVEFCKVMELDYSTSAGSGDSCCKMLLEFIDPTSHVYLLSFKLTLPELTSFPDFLVERTRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIVSVQAKSSEFPESPWERYTIKYRSDPAEPHLHSPWELYDTVTQWQQPRIDDENKAKLLTAFDKLMSTSTQGRYGIQDLMLLSRKTQFKNRFPVPLCLETIQERLQNDYYRSLEALRHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFSRNILPL 1730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62656357 62692279 + Hsped.05g13900.1 Hepe05g1390 570655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1390 1730 SMART WD40_4 383 421 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 572 612 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 531 569 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 318 358 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 276 315 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 433 498 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 SMART WD40_4 234 273 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 1345 1368 - -
Hepe05g1390 1730 CDD WD40 237 612 - -
Hepe05g1390 1730 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Hepe05g1390 1730 PANTHER WD REPEAT DOMAIN 9 45 1723 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 FunFam PH-interacting protein isoform X1 216 384 - -
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 791 815 - -
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 FunFam Bromodomain and WD repeat domain-containing protein 385 524 - -
Hepe05g1390 1730 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515(InterPro)
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Hepe05g1390 1730 Gene3D - 460 669 IPR015943 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam Bromodomain 1668 1716 IPR001487 GO:0005515(InterPro)
Hepe05g1390 1730 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 1295 1332 - -
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 1295 1327 - -
Hepe05g1390 1730 Coils Coil 685 705 - -
Hepe05g1390 1730 SUPERFAMILY Bromodomain 1668 1725 IPR036427 GO:0005515(InterPro)
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 1369 1414 - -
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 823 869 - -
Hepe05g1390 1730 Gene3D - 387 459 IPR015943 GO:0005515(InterPro)
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 1345 1415 - -
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam WD domain, G-beta repeat 393 421 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 Pfam WD domain, G-beta repeat 237 273 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 870 887 - -
Hepe05g1390 1730 Gene3D - 1624 1728 IPR036427 GO:0005515(InterPro)
Hepe05g1390 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515(InterPro)
Hepe05g1390 1730 MobiDBLite consensus disorder prediction 776 935 - -
Hepe05g1390 1730 CDD Bromo_WDR9_I_like 1606 1727 - -
Hepe05g1390 1730 Gene3D - 213 386 IPR015943 GO:0005515(InterPro)
Hepe05g1390 1730 SMART bromo_6 1626 1730 IPR001487 GO:0005515(InterPro)
Hepe05g1390 1730 FunFam Bromodomain and WD repeat-containing protein 534 668 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1390 K11797 - - csv:101214610 3140.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41