Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1404 ATGTCTACGGCCAGTTCGAGCTCTGTAAGGAAACCCGTTGAAGCTGTTCCCGACCAGTTTCCAGCCGGGCTTCGTGTTCTAGTTGTGGATGATGATCCGACTTGCCTTATGATCTTGGAGAGGATGCTTCGTATTTGCCGCTATGAAGTTACGAAATGTAGTCGAGCTGAGGATGCGCTGTCTCTTCTCAGACGTTACAAGAACGGGTTCGATATCGTTTTGAGTGATGTTCACATGCCAGACATGGATGGGTTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATAATGATGTCGGTGGATGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTGATAAAACCTGTTCGAATTGAAGCGCTGAAGAACATATGGCAACATGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACATAGAGCAATCTGGATGTGCGGATGATGTAGATCGGCAGCAAAAAACTAATGAAGATGCGGATTATTCGTCATCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGACGTAGACGATGCCGAGGAGAGAGATGATTCATCGACCCTTAAGAAACCAAGGGTCGTTTGGTCCGTTGAGCTCCATCAACAGTTTGTCGCTGCTGTTAATCAACTAGGAATTGATAAAGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCAGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATATCGCTTGTACCTGAGAAGACTAAGTGGAATCACACAACACCAGAGTAATTTAAATAACACATTCATGAGTGCCCAAGATGCATTTGGCTCGTCACTGAACGGGCTTGATCTTCAAACTCTCGCTGCTGCCGGTCAACTCCAGCCACAGAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCTACAGCGAAACCGGGCATGCCTATGCCCCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCAATGAATCTACTTCACGGAATTCCAACAACGATGGAGCCGAAACAACTTGCTAATCTGCAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGTTAGTGCCCAAGGAGGCCAAACTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTAGAGCACAGATCCTAAATGAAAGTACCTCAACTAGCGTAACAAGGCTTCCACAGACAATACAGCAGTCGATTTTGCCAAATGGAACCGGTGCAGTTTTGGCTAGGCACGAATTTGCCAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCACCCTCAACAATGTTAAATTTCCCCTTGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGATTGTCAAGTATTGTACCGAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATTAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATGTTTAGGGATATGCATTCTCAGAAGCCCCATGATTGGGACTTGCAACATGTAGGCGTGACCTTCGATGCATCTCAAAGTAGTCACGACATTCCATCCTCAGCTTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTATAGCAGCCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACACAGTATGGGTCAACAACTCAACCCTCTTTTCCTTGACGGTTCGGTGAGAGTTAAAGCTGAAAGAGCTTCTGATACTAGCAGTCAAACTGACCTTTACTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCCTTGCAACAGCTGAAAGTGAGTTGGAATGGGTATTTCATCACAATACTCCTGTTTAG 1983 45.18 MSTASSSSVRKPVEAVPDQFPAGLRVLVVDDDPTCLMILERMLRICRYEVTKCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDIEQSGCADDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVDDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFGSSLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKPGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSAQGGQTSSQLMQTPQPQARAQILNESTSTSVTRLPQTIQQSILPNGTGAVLARHEFANNSRGGGYNLVSPPSTMLNFPLNQTAELPGNSFPLQSTPGLSSIVPKGRFPDEVNSDIKGSEGFVPSYDMFRDMHSQKPHDWDLQHVGVTFDASQSSHDIPSSAFAHQGYASSQQNGQNRNTSIAAKAMFLLEEGSDNGNAHSMGQQLNPLFLDGSVRVKAERASDTSSQTDLYSEHFGQEDLMSALLKQQQGSLATAESELEWVFHHNTPV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 62906870 62911133 - Hsped.05g14040.1 Hepe05g1404 570669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1404 660 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Hepe05g1404 660 CDD REC_typeB_ARR-like 26 140 - -
Hepe05g1404 660 MobiDBLite consensus disorder prediction 180 201 - -
Hepe05g1404 660 SUPERFAMILY CheY-like 23 146 IPR011006 -
Hepe05g1404 660 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Hepe05g1404 660 MobiDBLite consensus disorder prediction 154 201 - -
Hepe05g1404 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 339 IPR045279 GO:0009736(InterPro)
Hepe05g1404 660 FunFam Two-component response regulator 200 263 - -
Hepe05g1404 660 FunFam Two-component response regulator 24 161 - -
Hepe05g1404 660 PIRSF RR_ARR_type-B 1 650 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Hepe05g1404 660 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Hepe05g1404 660 Gene3D - 24 157 - -
Hepe05g1404 660 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Hepe05g1404 660 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Hepe05g1404 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Hepe05g1404 660 Gene3D - 201 263 - -
Hepe05g1404 660 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0489 Hepe-Chr3:7604627 Hepe05g1404 Hepe-Chr5:62906870 6.20e-20 dispersed
Hepe05g1404 Hepe-Chr5:62906870 Hepe09g0595 Hepe-Chr9:5591848 7.61e-83 dispersed
Hepe10g0068 Hepe-Chr10:662676 Hepe05g1404 Hepe-Chr5:62906870 1.13e-91 transposed
Hepe03g0069 Hepe-Chr3:842176 Hepe05g1404 Hepe-Chr5:62906870 2.00e-198 wgd
Hepe03g1866 Hepe-Chr3:75645452 Hepe05g1404 Hepe-Chr5:62906870 8.19e-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55641 PF00072 Response_reg 1.70E-22 CL0304 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1404 K14491 - csv:101209013 1206.05