Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1421 ATGGCAAAGAAAAATGCCATTTGCGTGTCTTCGATGTTTCTTGTTGCCATGGTAGTTGCGGTGGCGGTCGCCGACAACAGCAAAGATGGTCAGGGCAACGTTAGTGGCGGTGCGGCGGCAGAGACCTCTACCTCCACCGGAGTAGTTAAGGCCCTTTGTCAACCTACTGAGTACCGAGAAACTTGCGAGAAAACCCTCGCAGAAGCTGGTAACAAGACGAGCGACCCACGTGAGCTAATCAAGGCTGGATTCCATGTCGCCATTGAACAAATAAAATCGGCCATCGGAAATTCCACCACCTTGAAAGAATCTTCCAAAGACCCCATTGCCAAGCAAGCACTCGACGCTTGCGGCGAGCTCATGGATTACGCAATCGACGATCTTTTAATTTCGTTTGACAGGGTCACCAACAATTTCGACATTACAAAACTCGATGATTACATCGAGGATCTAAAGATTTGGTTGAGTGGCGCATTGACTTTTCAAGAAACTTGCTTTGACGGATTTCAGAATGTTACCGGCAATGCAGGGAGAAAGATGAAGAAATTGTTGAAGACGTCGAGACAATTGACAATCAATGGGCTTGCAATGGTGAGTGAGATTAAGTCCTTCGTGACATCTTTATTCGGGTTGGCGTTGGGCGGGGAGCGACTATTGACAGAGAAATCTAAAGAACAAGGAAAAAAGTCGTCGTGGGTCAAAGCCAGACGAGGACTACTTGAAGCCACTCCAGGAAATATCAAGGCGGATGTCGTGGTGGCTAAAGATGGAAGTGGAAAGTACAAGACGGTGACTGAAGCTCTAAATGATGTTCCAAAGAACAGCAATGAAACGTTTGTGATTTATGTTAAGGAAGGAGTTTATCAAGAGCAAGTGATGGTCGATAAAACCATGACCTATGTCATGATGATTGGAGATGGTCCCACTAAGACTAAAATCACTGCTGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACTGCCACCGTTTCCGGAGCAGCAAAGCACCAGGCAGTGGCACTCCGAGTTCAATCCGACATGTCAATATTCTACAATTGTCAAATTGACGGTTACCAAGACACTCTGTACACCCATGCCCACCGTCAGTTCTACCGAGACTGCATCATCACCGGCACCATCGACTTCATCTTCGGCGATGCGGCTGTGGTGTTACAAAATTGCAAGATCTTCGTGAGGAAACCGATGGACAATCAGAAATGTTTTGTCACCGCCCAAGGTCGAACCCAAGAGAAGGAGCCGACTGGCATCATCCTCCAGAACTGTGATATCTCCTCCGACAAAGACTACTTCCCCGTCCGCCATACCATCAAGGCGTACCTCGGCCGCCCATGGAAGCAATATTCAAGAACCGTCATCATGCAGTGTCAAATCGACGACTTGATCCAGCCTGAAGGGTGGATGGCATGGACAGGCACCTTTGCTCTCAACACTTTGTTCTACACAGAGATCAATAACAGAGGACCTGGTGCCGCCAAAGATAAAAGGGTCAAGTGGAGTGGAATTAAGCAGATCACACAGGAACAAGCCGTAGATTTCACAGCTGAGAAGTTTATTCAGGGTGATTCATGGATTAAGCCCACCGGAGTGCCATACACTTCTGGCATGATGGCAGTGTAA 1641 47.65 MAKKNAICVSSMFLVAMVVAVAVADNSKDGQGNVSGGAAAETSTSTGVVKALCQPTEYRETCEKTLAEAGNKTSDPRELIKAGFHVAIEQIKSAIGNSTTLKESSKDPIAKQALDACGELMDYAIDDLLISFDRVTNNFDITKLDDYIEDLKIWLSGALTFQETCFDGFQNVTGNAGRKMKKLLKTSRQLTINGLAMVSEIKSFVTSLFGLALGGERLLTEKSKEQGKKSSWVKARRGLLEATPGNIKADVVVAKDGSGKYKTVTEALNDVPKNSNETFVIYVKEGVYQEQVMVDKTMTYVMMIGDGPTKTKITAGKNFIDGTPTFKTATVSGAAKHQAVALRVQSDMSIFYNCQIDGYQDTLYTHAHRQFYRDCIITGTIDFIFGDAAVVLQNCKIFVRKPMDNQKCFVTAQGRTQEKEPTGIILQNCDISSDKDYFPVRHTIKAYLGRPWKQYSRTVIMQCQIDDLIQPEGWMAWTGTFALNTLFYTEINNRGPGAAKDKRVKWSGIKQITQEQAVDFTAEKFIQGDSWIKPTGVPYTSGMMAV 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63288208 63290012 + Hsped.05g14210.1 Hepe05g1421 570686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1421 546 NCBIfam pectinesterase inhibitor domain 42 197 IPR006501 GO:0004857(InterPro)
Hepe05g1421 546 CDD PMEI-like_3 51 201 - -
Hepe05g1421 546 FunFam Pectinesterase 244 543 - -
Hepe05g1421 546 Gene3D - 244 543 IPR012334 -
Hepe05g1421 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 202 IPR035513 -
Hepe05g1421 546 PANTHER PECTINESTERASE 7 534 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1421 546 SMART PMEI_2 44 197 IPR006501 GO:0004857(InterPro)
Hepe05g1421 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 200 IPR035513 -
Hepe05g1421 546 FunFam Pectinesterase 45 202 - -
Hepe05g1421 546 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Hepe05g1421 546 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Hepe05g1421 546 Pfam Pectinesterase 250 529 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g1421 546 SUPERFAMILY Pectin lyase-like 248 542 IPR011050 -
Hepe05g1421 546 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1421 Hepe-Chr5:63288208 Hepe05g1423 Hepe-Chr5:63377461 0.0 dispersed
Hepe05g1421 Hepe-Chr5:63288208 Hepe05g1422 Hepe-Chr5:63336445 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1421 K01051 - csv:101212686 840.106