Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1423 ATGGCAAAGAAAAACGCCATTTGCGTGTCTTCGTTGTTTCTTGTTGCCATGGTAGTTGCGGTGGCGGTCGCCGACAACAACAAAGATGGTCAGGGCAACGTTAGTGGCGGTGCGGCGACAGAGACCTCTACCTCCACCGGAATAGTTAAGACCCTTTGTCAACCTACTGATTACCGAGAAACTTGCGAGAAAACCCTCGCAGAAGCTGGTAACAAGACGAGCGACCCACGTGAGCTAATAAAGGCTGGATTCCATGTCGCCATTGAACAAATAAAATTGGCCATCGGAAATTCCACCACCTTGAAAGAATCTTCCAAAGACCCCATGGCCAAGCAAGCACTCGACGCTTGTGGCGAGCTCATGAATTACGCAATCGACGATCTTTTAATTTCGTTTGATAGGGTCACCAACAATTTCGACATTACAAAACTCGATGATTACATCGAGGATCTTAAGATTTGGTTGAGTGGCGCATTGACTTTTCAAGAAACTTGCTTTGACGGATTTCAGAATGTTACCGGCAATGCAGGGAGAAAGATGAAGAAATTGTTGAAGACGTCGAGACAATTGACAATCAATGGGCTTGCAATGGTGAGTGAGATTAAGTCCTTTGTGACATCTTTATTTGGGTTGGCGTTGGGCGGGGAGCGACTACTGACAGAGAAATCTAATGAACAAGGAAAAAAACCGTCGTGGGTCAAAGCCAGACGAGGACTACTTGAAGCCACTCCGGGCAATATCAAGGCGGATGTCGTGGTGGCTAAAGATGGAAGTGGAAAGTATAAGACGGTGACTGAAGCTCTAAATGATGTTCCAAAGAACAGCAATGAAACGTTTGTGATTTATGTTAAGGAAGGAGTTTATCAAGAGCAAGTGATGGTCGATAAAACCATGACCTATGTCATGATGATTGGAGATGGTCCGACTAAGACCAAAATCACTGCTAGCAAGAATTTCATTGACGGAACACCCACCTTCAAAACTGCCACCGTTTCGGTGATCGGGAACAACTTTATAGCAAAGGACATGGGGTTTGAAAACTCAGCCGGAGCAGCAAAACACCAAGCAGTGGCACTACGAGTTCAATCCGACATGTCAATCTTCTACAATTGTCAAATTGACGGTTACCAAGACACTCTGTACACCCATGCCCACCGTCAGTTCTACCGAGACTGCATCATCACCGGCACCATCGACTTCATCTTCGGCGATGCGGCTGTGGTGTTACAAAATTGCAAGATCTTCGTGAGGAAGCCGATGGACAACCAAAAATGTTTTGTCACAGCCCAAGGTCGAACCCAAGAGAAGGAGCCGACTGGCATCATCCTCCAAAACTGTGATATCTCCTCCGACAAAGATTACTTTCCCGTCCGCCATACCATCAAGGCGTACCTCGGCCGCCCATGGAAGCAATATTCAAGAACCGTCATCATGCAGTGTCAAATCGACGACTTGATCCAGCCTGAAGGGTGGATGGCATGGACAGGCACCTTTGCTCTCAACACTCTGTTCTACACAGAGATCAATAACAGGGGACCTGGTGCCGCCAAAGACAAAAGGGTCAAGTGGAGTGGAATTAAGCAGATCACACAGGAACAGGCCGTAGATTTCACAGCTGAGAAGTTTATTCAGGGTGATTCATGGATTAAGCCTACCGGAGTGCCGTACACTTCTGGCATGATGGCAGTGTAA 1692 46.99 MAKKNAICVSSLFLVAMVVAVAVADNNKDGQGNVSGGAATETSTSTGIVKTLCQPTDYRETCEKTLAEAGNKTSDPRELIKAGFHVAIEQIKLAIGNSTTLKESSKDPMAKQALDACGELMNYAIDDLLISFDRVTNNFDITKLDDYIEDLKIWLSGALTFQETCFDGFQNVTGNAGRKMKKLLKTSRQLTINGLAMVSEIKSFVTSLFGLALGGERLLTEKSNEQGKKPSWVKARRGLLEATPGNIKADVVVAKDGSGKYKTVTEALNDVPKNSNETFVIYVKEGVYQEQVMVDKTMTYVMMIGDGPTKTKITASKNFIDGTPTFKTATVSVIGNNFIAKDMGFENSAGAAKHQAVALRVQSDMSIFYNCQIDGYQDTLYTHAHRQFYRDCIITGTIDFIFGDAAVVLQNCKIFVRKPMDNQKCFVTAQGRTQEKEPTGIILQNCDISSDKDYFPVRHTIKAYLGRPWKQYSRTVIMQCQIDDLIQPEGWMAWTGTFALNTLFYTEINNRGPGAAKDKRVKWSGIKQITQEQAVDFTAEKFIQGDSWIKPTGVPYTSGMMAV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63377461 63379269 + Hsped.05g14230.1 Hepe05g1423 570688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1423 563 SUPERFAMILY Pectin lyase-like 248 559 IPR011050 -
Hepe05g1423 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 200 IPR035513 -
Hepe05g1423 563 CDD PMEI-like_3 51 201 - -
Hepe05g1423 563 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857(InterPro)
Hepe05g1423 563 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Hepe05g1423 563 Pfam Pectinesterase 250 546 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g1423 563 SMART PMEI_2 44 197 IPR006501 GO:0004857(InterPro)
Hepe05g1423 563 FunFam Pectinesterase 244 560 - -
Hepe05g1423 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 202 IPR035513 -
Hepe05g1423 563 Gene3D - 244 560 IPR012334 -
Hepe05g1423 563 FunFam Pectinesterase 45 202 - -
Hepe05g1423 563 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Hepe05g1423 563 PANTHER PECTINESTERASE 7 551 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1423 563 NCBIfam pectinesterase inhibitor domain 42 197 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1421 Hepe-Chr5:63288208 Hepe05g1423 Hepe-Chr5:63377461 0.0 dispersed
Hepe05g1423 Hepe-Chr5:63377461 Hepe05g1425 Hepe-Chr5:63523971 0.0 dispersed
Hepe05g1422 Hepe-Chr5:63336445 Hepe05g1423 Hepe-Chr5:63377461 0.0 tandem
Hepe05g1423 Hepe-Chr5:63377461 Hepe05g1424 Hepe-Chr5:63503641 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1423 K01051 - csv:101212686 877.856