Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1424 ATGGCAGCGAAAAAACTCATTTTCGTGTCTTTGTTGTTTATTGTTGCCATGGTAGTTGCCGCGGCGGTCGCCGACAACAGCAAAGATGGCCAAGGCAACGTTAGTGGCGGTGCGACGACGGAGACCTCCACCTTCACGGGAGTAGTTAAGTCCCTTTGTCAACCTACTAAATACCGAGAAACTTGCGAGAAAACCCTCACGGAAGCTGGTAGCAAGACGAGCGACCCACGTGAGCTAATCAAGGTCGGATTCCATGTCGCCATTGAACATATAAAATCGGCCATCGGAAATTCCACCACCTTGAAAGAATCTGCCACAGACCCCATGACCAAGCAAGCACTTGACGCTTGCGGCGAGCTCATGGAATCCGCAATCGACGATCTTTTAATTTCGTTTGACAGGGTCACTGACAATTTCGACTTTACCAAACTTGATGATTACATCGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTTTCAAGAAACTTGTTTTGACGGATTTCAGAATGTTACCGGCAATGCAGGGAGAAAGATGAAGAACTTGTTGAAGACGTCGAGACAATTGACAATCAATGGGCTTGAAATGGTGAGTGAGATTAAGTCATTCGTGACATCTTTATTTGGGTTGTCGGGCGGGGAGCGACTACTGACAGAGGAATCCAATGAACGAGGAAAAGAGCCGTCATGGGTCAACGACAGACGAGGACTACTTGGAGCCACTCCAGGCAACATCAAGGCGGATGTCGTGGTGGCTAAAGATGGAAGTGGAAAGTACAAGACGGTGACTGAAGCTCTAAAAGATGTTCCAAAGAATAGTAATGTAACGTTTGTGATTTATGTTAAGGAAGGAGTTTATCAAGAGCAAGTGATGGTCGATAAATCCATGACCTATGTCATGATGATTGGAGATGGTCCGACTAAGACCAAAATCACTGATGGGAAGAACTTCATTGACGGAACACCCACCTTCAAAACTGCCACCGTTTCGGTGATCGGGACAAACTTCATAGCAAAAGACATGGGGTTCGAGAACACAGCCGGAGCAGCGAAGCACCAGGCAGTGGCACTCCGAGTTCAATCGGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACCCACGCCCATCGTCAATTCTACCGAGACTGCGTCATCACCGGCACCATCGACTTCATCTTCGGCAATGCCGCCGTGGTGTTTCAAAACTGCAAGATCTTCGTGAGGAAGCCAATGGATAGTCAAGGATGTATCGTCACCGCCCAAGGTCGAACTCAAGAGAAGGAACCGACCGGCATCGTCCTCCAGAACTGTGTCATCTCCTCCGACAAAGAGTACTTCCCCGTCCGTCATATCATCAAGTCGTATCTCGGTCGCCCATGGAAGCAATATTCAAGAACTATCATCATGCAGTGCCAAATCGACGACTTGATTCAGCCTGAAGGGTGGCTCCCATGGTTGGGCAACTTTGCTCTCAACACTCTTTTTTACACAGAGCTCGATAACAGGGGACCTGGGGCTGCCAAGGACAAACGAGTCAAGTGGAGTGGAATTAAGGAGATCACACAGCAACAAGCCGTCGATTTCACTGCCGCGAGGTTTATTCATGGCGATTCCTGGATTAAAGCCACTGGAGTACCGTACACTTCTGGCATGATGGAAAACACAACATAG 1695 48.08 MAAKKLIFVSLLFIVAMVVAAAVADNSKDGQGNVSGGATTETSTFTGVVKSLCQPTKYRETCEKTLTEAGSKTSDPRELIKVGFHVAIEHIKSAIGNSTTLKESATDPMTKQALDACGELMESAIDDLLISFDRVTDNFDFTKLDDYIEDLKVWLSGALTFQETCFDGFQNVTGNAGRKMKNLLKTSRQLTINGLEMVSEIKSFVTSLFGLSGGERLLTEESNERGKEPSWVNDRRGLLGATPGNIKADVVVAKDGSGKYKTVTEALKDVPKNSNVTFVIYVKEGVYQEQVMVDKSMTYVMMIGDGPTKTKITDGKNFIDGTPTFKTATVSVIGTNFIAKDMGFENTAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCVITGTIDFIFGNAAVVFQNCKIFVRKPMDSQGCIVTAQGRTQEKEPTGIVLQNCVISSDKEYFPVRHIIKSYLGRPWKQYSRTIIMQCQIDDLIQPEGWLPWLGNFALNTLFYTELDNRGPGAAKDKRVKWSGIKEITQQQAVDFTAARFIHGDSWIKATGVPYTSGMMENTT 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63503641 63505448 + Hsped.05g14240.1 Hepe05g1424 570689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1424 564 CDD PMEI-like_3 51 201 - -
Hepe05g1424 564 FunFam Pectinesterase 46 202 - -
Hepe05g1424 564 FunFam Pectinesterase 243 559 - -
Hepe05g1424 564 NCBIfam pectinesterase inhibitor domain 42 183 IPR006501 GO:0004857(InterPro)
Hepe05g1424 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 200 IPR035513 -
Hepe05g1424 564 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Hepe05g1424 564 Gene3D - 243 559 IPR012334 -
Hepe05g1424 564 Pfam Pectinesterase 249 545 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g1424 564 SMART PMEI_2 44 197 IPR006501 GO:0004857(InterPro)
Hepe05g1424 564 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Hepe05g1424 564 PANTHER PECTINESTERASE 6 550 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1424 564 SUPERFAMILY Pectin lyase-like 247 558 IPR011050 -
Hepe05g1424 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 202 IPR035513 -
Hepe05g1424 564 Pfam Plant invertase/pectin methylesterase inhibitor 49 197 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1422 Hepe-Chr5:63336445 Hepe05g1424 Hepe-Chr5:63503641 0.0 dispersed
Hepe05g1424 Hepe-Chr5:63503641 HepeContig65g0050 Hepe-ChrContig65:4828376 0.0 dispersed
Hepe05g1423 Hepe-Chr5:63377461 Hepe05g1424 Hepe-Chr5:63503641 0.0 tandem
Hepe05g1424 Hepe-Chr5:63503641 Hepe05g1425 Hepe-Chr5:63523971 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1424 K01051 - csv:101212686 872.078