Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1426 ATGGCAAAAAAACTCATCATTCTTGTGTTTTCGTTCTTTCTTCTTGCCATGGTAGTTACTGTGGTGATCGGCGAGGGCAGCGATAGTGGCGGTGCGACGGCGGAGGACTCCACCACCACTGAAGCGATTAAGACCCTTTGTCAACCTACTGATTATCGAGAAACTTGCGAGAAAACCCTGACGGAGGCTGGTACCAAGACGAGCGACCCACGTGAGCTAATCAAGGTCGCATTCCACGTCGCCATTGGACAGATAAAATTGGCAATCGAAAAAGCCACCAGCTTGAAAGAATCTGCTCAAGACCCCATGGCCAAGCAAGCACTCGATGCTTGTGGCGAGCTCATGGATTCTGCAGTTGACGATCTTTTAATTTCGTTTGACAGAGTCACTGACAATTTCGACATTACCAAACTCGATGATTACATCGAGGATCTTAAGATTTGGTTGAGTGGCGCATTGACTTTTCAAGAAACTTGCTTGGACGGATTCAATAATGTTACCGGCAATGGAGGGAAAAAGATGAAAAAAATGTTGAAAATGTCGAGACAAATAACAATCAATGGGCTTGGAATGGTGAGTGAGATTAAATCCCTTGTGACATCTTTATTCGGGTTGTCGTTGGGCGGGGAGCGACTATTGAAAGAGGAATCCAAAGACCAAGGAGAAGAGCCGTCGTGGGTCAACGACAGACGAGGACTACTTGGAGCCGCTCGAGGCAACATCAAGGCAGATGTTGTGGTGGCTAAAGATGGAAGTGGAAAGTTCAAAACTGTGACTGAAGCTCTAAATGTGGTCCCAAAGAACAGTAATAAAACATTTGTTATTTATGTTAAGGCAGGAGTTTATCAAGAGCAAGTGATGGTTGATAAAGATATGACCTATGTCATGATGATTGGAGATGGTCCGACTAAGACCAAGATCACGGCTGGCAAGAACTTCGTTGACGGAACACCCACGTTCAAAACCGCTACTGTTTCGGTAGTCGGGACCAACTTCATAGCAAAAGATATGGGGTTCGAGAACACAGCTGGAGCAGCAAAGCACCAGGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACCCACGCCCACCGTCAATTCTATCGAGATTGTGTCATCACCGGAACCATCGACTTCATCTTCGGCAACGCGGCAGTGGTGTTCCAAAATTGCAAGATCTTCGTGAGGAAGCCAATGGAGAATCAACAATGTATCGTCACCGCCCAAGGTCGAACCCAACGAAAGGAGCCGACCGGTACCGTCCTCCAGAACTGTGTCATCTCCGCCGACAAAGATTACTTCCCCGTCCGCCATATCATCAAGTCGTACCTCGGCCGCCCATGGAAGCAATTTTCAAGAACCATCATCATGCAGTGCCAAATCGATGACTTGATCCAGCCTGAAGGGTGGCTTCCATGGGAGGGCAACTTTGCTCTTAACACATTGTTTTACACGGAGATCAATAATAGGGGACCTGGGGCCGCCAAGGACAGGCGGGTCAAGTGGAGGGGAGTTAAGCAGATCACGCCAGAGCACGCCATTGATTTCACCGCTGGATTGTTTATTCGCGGCAATCCTTGGATTAAGCCCACCGGAGTGCCGTATACATCCGGCATGATGAAAGTGTAA 1674 47.85 MAKKLIILVFSFFLLAMVVTVVIGEGSDSGGATAEDSTTTEAIKTLCQPTDYRETCEKTLTEAGTKTSDPRELIKVAFHVAIGQIKLAIEKATSLKESAQDPMAKQALDACGELMDSAVDDLLISFDRVTDNFDITKLDDYIEDLKIWLSGALTFQETCLDGFNNVTGNGGKKMKKMLKMSRQITINGLGMVSEIKSLVTSLFGLSLGGERLLKEESKDQGEEPSWVNDRRGLLGAARGNIKADVVVAKDGSGKFKTVTEALNVVPKNSNKTFVIYVKAGVYQEQVMVDKDMTYVMMIGDGPTKTKITAGKNFVDGTPTFKTATVSVVGTNFIAKDMGFENTAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCVITGTIDFIFGNAAVVFQNCKIFVRKPMENQQCIVTAQGRTQRKEPTGTVLQNCVISADKDYFPVRHIIKSYLGRPWKQFSRTIIMQCQIDDLIQPEGWLPWEGNFALNTLFYTEINNRGPGAAKDRRVKWRGVKQITPEHAIDFTAGLFIRGNPWIKPTGVPYTSGMMKV 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63531385 63533257 + Hsped.05g14260.1 Hepe05g1426 570691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1426 557 Pfam Plant invertase/pectin methylesterase inhibitor 42 189 IPR006501 GO:0004857(InterPro)
Hepe05g1426 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Hepe05g1426 557 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Hepe05g1426 557 SMART PMEI_2 38 191 IPR006501 GO:0004857(InterPro)
Hepe05g1426 557 FunFam Pectinesterase 39 196 - -
Hepe05g1426 557 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g1426 557 CDD PMEI-like_3 45 195 - -
Hepe05g1426 557 FunFam Pectinesterase 238 554 - -
Hepe05g1426 557 SUPERFAMILY Pectin lyase-like 242 553 IPR011050 -
Hepe05g1426 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Hepe05g1426 557 Gene3D - 238 554 IPR012334 -
Hepe05g1426 557 PANTHER PECTINESTERASE 5 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1426 557 NCBIfam pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857(InterPro)
Hepe05g1426 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 194 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1426 Hepe-Chr5:63531385 HepeContig65g0050 Hepe-ChrContig65:4828376 0.0 dispersed
Hepe05g1425 Hepe-Chr5:63523971 Hepe05g1426 Hepe-Chr5:63531385 0.0 tandem
Hepe05g1426 Hepe-Chr5:63531385 Hepe05g1427 Hepe-Chr5:63536369 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1426 K01051 - csv:101212686 875.544