Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1452 ATGGCTGTGGCATGTGCTGAAACAGCCTCACAACAACCACTAAGAGCACAGGTTTGGATCTTGAAAGTTTCTATTCACTGTGAAGGATGCAAGAGGAAGGTTAAGAAAGTTCTACAGAGCATTGATGGTGTTTATACCACCACCATTGACTCAGAACAGCAGAAAGTTACAGTCACTGGAAATGTAAGTCTCGAGACTCTGACCAAGAGGTTAGAAAAAGCAGGTAAGCGTGCGGAAATTTGGCCAGAAAAACCAGCGGGAAAAGAGAAACAGTTCATCAAGATGTTGGAGACTGACAAAGGGGGCCAAGAAAATGGAAGAAGTCCGAGTACTAACAAAGCTTCAGCAAAGAAGGTTGAGTTTAAGGTCAACCCTGTCAAGAATAACAACCGTGAAGAACAACAGATTGAGAAGTCAAAGAAGAAAATTGGAAGCTCTCCCAAAAAGCCTCCGGCCGGGGAGGCGCCGGCGCCGGCGTCCAACTCCAATGGCAATAATACTACTGGAAATGAGGGTTGTTCTCCAGACAAAAGTGGTGAAAAGAAGAAAAGGAAGGGGCAACCAGGTAATAACAGCAGTGATAAATCAGGTTCAAATCTCCAGAATGGACAAGGGATACTCAATATGGATCAAGATATGGGCCTAAGAAATGGTAACCCATTGGCCCAACAAATATACACAGGCCCGAAGGGTTACTATTTTACTCCACCTATAATGGGGTTAAATTACAATGCGCCACATTTAGGTAAAGGTCCTGAATTTCTTTACCATGTCCCACCGATTCCATTTTCATATTCGTATGATCAGACAGGAAATTATGAGGATCAAGGAAAGCCACAGACGTACCTGGATTATTTCAGTGAAGAAAATGCCCATGGATGCTTCATCATGTGA 894 43.51 MAVACAETASQQPLRAQVWILKVSIHCEGCKRKVKKVLQSIDGVYTTTIDSEQQKVTVTGNVSLETLTKRLEKAGKRAEIWPEKPAGKEKQFIKMLETDKGGQENGRSPSTNKASAKKVEFKVNPVKNNNREEQQIEKSKKKIGSSPKKPPAGEAPAPASNSNGNNTTGNEGCSPDKSGEKKKRKGQPGNNSSDKSGSNLQNGQGILNMDQDMGLRNGNPLAQQIYTGPKGYYFTPPIMGLNYNAPHLGKGPEFLYHVPPIPFSYSYDQTGNYEDQGKPQTYLDYFSEENAHGCFIM 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 63835891 63837211 - Hsped.05g14520.1 Hepe05g1452 570717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1452 297 MobiDBLite consensus disorder prediction 98 215 - -
Hepe05g1452 297 ProSiteProfiles Heavy-metal-associated domain profile. 16 79 IPR006121 GO:0046872(InterPro)
Hepe05g1452 297 MobiDBLite consensus disorder prediction 124 144 - -
Hepe05g1452 297 MobiDBLite consensus disorder prediction 158 174 - -
Hepe05g1452 297 MobiDBLite consensus disorder prediction 103 117 - -
Hepe05g1452 297 SUPERFAMILY HMA, heavy metal-associated domain 16 82 IPR036163 GO:0046872(InterPro)
Hepe05g1452 297 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 17 297 - -
Hepe05g1452 297 MobiDBLite consensus disorder prediction 175 189 - -
Hepe05g1452 297 FunFam Copper transport protein ATOX1 15 83 - -
Hepe05g1452 297 CDD HMA 21 79 IPR006121 GO:0046872(InterPro)
Hepe05g1452 297 Gene3D - 17 80 - -
Hepe05g1452 297 MobiDBLite consensus disorder prediction 190 208 - -
Hepe05g1452 297 Pfam Heavy-metal-associated domain 22 76 IPR006121 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1452 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1452 Hepe-Chr5:63835891 Hepe08g2304 Hepe-Chr8:62896795 2.55e-24 dispersed
Hepe05g1452 Hepe-Chr5:63835891 Hepe05g1523 Hepe-Chr5:64743603 6.75e-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g319 . . . . . . . . . . . Cma14g01622 . Car14g01447 . . . Bhi01g01001 . . . Hepe05g1452 . Lcy11g1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008753 2 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 0 3 34