Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1466 ATGAAGCCGTACGGTCACTCTATGGAAGCCTCTCACTCCGATCCGTCGCCGGAATGGACCGCTTCCGGACCCGATTCAGAGCCGCTTTGGCCGTTGGGATCGAGAGAACGCGAATCGTACCCTGAACGCCCTGAAGAAGCCGATTGTATATACTATCTACGTACTGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCCAGACCTGGTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAACCTGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTTAGTCCCGTGTCGCTGAATTTCTATGGCTACCCTCTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTTCAGCACCATCACACGTTCAGGTTACACCAGTGCCAGCTCCAGTGCCTACACCCTCTGTTTATCCTCCTGTGCAGTCTCCGTCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTCCATTGCTGTCGAGCCCATATGTACACGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCATCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTCTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCATCTGCCTATGCAGGATCTTATCAGCCCATGCCATCTGCCGGTCCGTCAAGTACTAGCCACAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAATGCCAATATTACATGAGAACAGGGGACTGTAAATTTGGATCTTCTTGTAGATACCATCACCCATCAGAATTGGTCACTTCGAGGTCAAGTGTTATCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGCCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCGGGATCCAGAAAGGACTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACATCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGCGAGCAGTACCTCCAGTACCACCAGTGCGGAGGGTCGTACTTGA 1437 49.83 MKPYGHSMEASHSDPSPEWTASGPDSEPLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGGRDYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQEKGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFSAPSHVQVTPVPAPVPTPSVYPPVQSPSAHSSQQYGVILARPPLLSSPYVHGPYGPMLVSPGVVQFPSWSPYPASMSPVASPSAQPSLGSGQLYGMAQVSPSASAYAGSYQPMPSAGPSSTSHKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPSELVTSRSSVILSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSASSTSSTTSAEGRT 478
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 64057579 64062082 + Hsped.05g14660.1 Hepe05g1466 570731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1466 478 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 MobiDBLite consensus disorder prediction 422 478 - -
Hepe05g1466 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 MobiDBLite consensus disorder prediction 402 478 - -
Hepe05g1466 478 PANTHER PROTEIN PHOSPHATASE RELATED 35 374 IPR050974 GO:0003729(PANTHER)
Hepe05g1466 478 Gene3D - 40 120 - -
Hepe05g1466 478 Gene3D - 289 339 - -
Hepe05g1466 478 SUPERFAMILY CCCH zinc finger 45 71 IPR036855 GO:0046872(InterPro)
Hepe05g1466 478 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 FunFam CCCH type zinc finger protein 298 383 - -
Hepe05g1466 478 Gene3D - 121 172 - -
Hepe05g1466 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SMART c3hfinal6 43 70 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SMART c3hfinal6 136 163 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SMART c3hfinal6 90 117 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SMART c3hfinal6 346 373 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SUPERFAMILY CCCH zinc finger 93 119 IPR036855 GO:0046872(InterPro)
Hepe05g1466 478 MobiDBLite consensus disorder prediction 1 42 - -
Hepe05g1466 478 SUPERFAMILY CCCH zinc finger 350 377 IPR036855 GO:0046872(InterPro)
Hepe05g1466 478 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872(InterPro)
Hepe05g1466 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 70 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 373 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 93 117 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872(InterPro)
Hepe05g1466 478 ProSiteProfiles Zinc finger C3H1-type profile. 43 71 IPR000571 GO:0046872(InterPro)
Hepe05g1466 478 MobiDBLite consensus disorder prediction 277 292 - -
Hepe05g1466 478 Gene3D - 345 393 - -
Hepe05g1466 478 MobiDBLite consensus disorder prediction 277 302 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1466 Hepe-Chr5:64057579 Hepe09g1303 Hepe-Chr9:18823483 1.61e-17 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55645 PF00642 zf-CCCH 1.30E-07 CL0537 Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1466 - - - 0.0