Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g1466 | ATGAAGCCGTACGGTCACTCTATGGAAGCCTCTCACTCCGATCCGTCGCCGGAATGGACCGCTTCCGGACCCGATTCAGAGCCGCTTTGGCCGTTGGGATCGAGAGAACGCGAATCGTACCCTGAACGCCCTGAAGAAGCCGATTGTATATACTATCTACGTACTGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCCAGACCTGGTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAACCTGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAAAGGTTCTCTTAGTCCCGTGTCGCTGAATTTCTATGGCTACCCTCTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTTCAGCACCATCACACGTTCAGGTTACACCAGTGCCAGCTCCAGTGCCTACACCCTCTGTTTATCCTCCTGTGCAGTCTCCGTCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTCCATTGCTGTCGAGCCCATATGTACACGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCATCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTCTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCATCTGCCTATGCAGGATCTTATCAGCCCATGCCATCTGCCGGTCCGTCAAGTACTAGCCACAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAATGCCAATATTACATGAGAACAGGGGACTGTAAATTTGGATCTTCTTGTAGATACCATCACCCATCAGAATTGGTCACTTCGAGGTCAAGTGTTATCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGCCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCGGGATCCAGAAAGGACTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACATCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCAGCGAGCAGTACCTCCAGTACCACCAGTGCGGAGGGTCGTACTTGA | 1437 | 49.83 | MKPYGHSMEASHSDPSPEWTASGPDSEPLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGGRDYPERVGQPVCQYYMRTGMCKFGASCKYHHPQQEKGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFSAPSHVQVTPVPAPVPTPSVYPPVQSPSAHSSQQYGVILARPPLLSSPYVHGPYGPMLVSPGVVQFPSWSPYPASMSPVASPSAQPSLGSGQLYGMAQVSPSASAYAGSYQPMPSAGPSSTSHKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPSELVTSRSSVILSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSASSTSSTTSAEGRT | 478 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 64057579 | 64062082 | + | Hsped.05g14660.1 | Hepe05g1466 | 570731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g1466 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 346 | 374 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | MobiDBLite | consensus disorder prediction | 422 | 478 | - | - | |
| Hepe05g1466 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | MobiDBLite | consensus disorder prediction | 402 | 478 | - | - | |
| Hepe05g1466 | 478 | PANTHER | PROTEIN PHOSPHATASE RELATED | 35 | 374 | IPR050974 | GO:0003729(PANTHER) | |
| Hepe05g1466 | 478 | Gene3D | - | 40 | 120 | - | - | |
| Hepe05g1466 | 478 | Gene3D | - | 289 | 339 | - | - | |
| Hepe05g1466 | 478 | SUPERFAMILY | CCCH zinc finger | 45 | 71 | IPR036855 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 136 | 164 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | FunFam | CCCH type zinc finger protein | 298 | 383 | - | - | |
| Hepe05g1466 | 478 | Gene3D | - | 121 | 172 | - | - | |
| Hepe05g1466 | 478 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SMART | c3hfinal6 | 43 | 70 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SMART | c3hfinal6 | 136 | 163 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SMART | c3hfinal6 | 90 | 117 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SMART | c3hfinal6 | 346 | 373 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SUPERFAMILY | CCCH zinc finger | 93 | 119 | IPR036855 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Hepe05g1466 | 478 | SUPERFAMILY | CCCH zinc finger | 350 | 377 | IPR036855 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 90 | 118 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SUPERFAMILY | CCCH zinc finger | 304 | 327 | IPR036855 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 163 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 45 | 70 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 301 | 326 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 348 | 373 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 93 | 117 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | SUPERFAMILY | CCCH zinc finger | 138 | 164 | IPR036855 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 43 | 71 | IPR000571 | GO:0046872(InterPro) | |
| Hepe05g1466 | 478 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
| Hepe05g1466 | 478 | Gene3D | - | 345 | 393 | - | - | |
| Hepe05g1466 | 478 | MobiDBLite | consensus disorder prediction | 277 | 302 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe05g1466 | Hepe-Chr5:64057579 | Hepe09g1303 | Hepe-Chr9:18823483 | 1.61e-17 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55645 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g1466 | - | - | - | 0.0 |