Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1467 ATGGCTACCTCTAAAGCCTCAGATAAAGCCTACCCAATTTATGAAACTGGTCAATCTCAAATGGGTTTTGCTCTGATTCAAAGAAATCCATCTCCAATATCTCAAAATGGAGGAGGAGAGAGAAGAGGCAGAAGAAAACAAGCTGAACCAGGAAGGTTCCTTGGTGTCAGAAGAAGGCCTTGGGGCAGATATGCTGCTGAAATTAGAGACCCAACTACCAAAGAAAGGCATTGGCTTGGTACTTTTGACACTGCTCATGAAGCTGCCCTGGCTTATGACAGAGCTGCCCTGTCAATGAAGGGCACTCAAGCAAGAACCAACTTCATTTACTCTGACACCTCAACTTTCCATTCCCTTCTCACTAATAATTTCCTTCCTAATTCTCAATTACAACAATCCTCCCATATTATCATTCCCCCTAATCATCAAAACAACACTCAATCTCAGCCCTCCATTCATCATCATCCTTCTGCTAATCATCATGATCATCATGACAGCAATTTCTTCTTCTCTAATGATTCCAAGAACTCTGGCTATTTGAGCTGCATTGTACCTGATAATTGCTTGAAACCCCCTCCTTCAGAATCAAAGAACAGCCATTATTATTGCTCCACTACTACTTCTTCAAATGATCTTCAAAAATTGAGCTTCTTTAGCTCAAACTCCATTGACACACTCCCTTTCAATGCTGGTTTTGGCTCTGTTATGGAGGAAACAAATTGTTGTAATGATGGAGTTTGGGATAACAAACAGCAAATTTGGGAGAGTAATGGTGATGAACTCTCAGTTATAATCAATAATAGCTCTTCTTCTTCTTCTTCTAATTCCTCCTCCTCAATGATGATGGCTGAAGATGGAGCTTTTCATCCATTTATGAACAGCTCTTATGGTGGTACTACTTGTTCTCCTTCAGTTTCTCCTTTTGGTGATGCATTTGATTTTGGGTATCCATTACTTTGA 960 40.21 MATSKASDKAYPIYETGQSQMGFALIQRNPSPISQNGGGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGTQARTNFIYSDTSTFHSLLTNNFLPNSQLQQSSHIIIPPNHQNNTQSQPSIHHHPSANHHDHHDSNFFFSNDSKNSGYLSCIVPDNCLKPPPSESKNSHYYCSTTTSSNDLQKLSFFSSNSIDTLPFNAGFGSVMEETNCCNDGVWDNKQQIWESNGDELSVIINNSSSSSSSNSSSSMMMAEDGAFHPFMNSSYGGTTCSPSVSPFGDAFDFGYPLL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 64068806 64069765 - Hsped.05g14670.1 Hepe05g1467 570732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1467 319 CDD AP2 52 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 MobiDBLite consensus disorder prediction 28 51 - -
Hepe05g1467 319 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 MobiDBLite consensus disorder prediction 139 167 - -
Hepe05g1467 319 FunFam Ethylene-responsive transcription factor 2 52 110 - -
Hepe05g1467 319 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677(InterPro)
Hepe05g1467 319 SMART rav1_2 52 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1467 319 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 279 - -
Hepe05g1467 319 MobiDBLite consensus disorder prediction 139 154 - -
Hepe05g1467 319 Pfam AP2 domain 54 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2479 Hepe-Chr2:71299636 Hepe05g1467 Hepe-Chr5:64068806 3.76e-32 dispersed
Hepe05g1467 Hepe-Chr5:64068806 Hepe10g0048 Hepe-Chr10:448301 1.34e-25 dispersed
Hepe05g1467 Hepe-Chr5:64068806 Hepe05g1041 Hepe-Chr5:49478590 4.18e-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55646 PF00847 AP2 4.10E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1467 - - - 0.0