Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1485 ATGTCTTTGAAGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGCCCGAACTCGGCGACGGTTTAGCTCAGAGTTGTTGGGCTCACATGCCTCACGAGTTGCTCAGAGAGGTTCTGATTAGAATCGAGACCTCTGAGAATGCTTGGCCTCCTCGGAAGACCGTCGTCTCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCTCAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATGTCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTGAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGTTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGCTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGTTATTCCTTCCTCTGCTATTAAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCCCGCCAAGTCGTATCGACTTTCTTCCATCGATGAGATTTTCCCGGTCAAAATCAAATCAAACAGACGAACAACCATCGGGACCTTCAACTAATCAGAAAGATGGAGTTCTGGTGCTTAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACTTGCTGGACCTGAGCATGAGAAGATCATCCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.65 MSLKSIIQEMRSRSRRVVQDGSTPELGDGLAQSCWAHMPHELLREVLIRIETSENAWPPRKTVVSCAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIMSLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRFVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDVIPSSAIKPGGVAPIQTEFPPSRIDFLPSMRFSRSKSNQTDEQPSGPSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 64291328 64296671 - Hsped.05g14850.1 Hepe05g1485 570750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1485 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Hepe05g1485 387 SUPERFAMILY F-box domain 30 78 IPR036047 GO:0005515(InterPro)
Hepe05g1485 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Hepe05g1485 387 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Hepe05g1485 387 Pfam Tub family 96 382 IPR000007 -
Hepe05g1485 387 MobiDBLite consensus disorder prediction 1 24 - -
Hepe05g1485 387 CDD F-box_AtTLP-like 35 79 - -
Hepe05g1485 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Hepe05g1485 387 Gene3D - 29 82 - -
Hepe05g1485 387 PANTHER TUBBY-RELATED 28 386 - -
Hepe05g1485 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Hepe05g1485 387 FunFam Tubby-like F-box protein 92 387 - -
Hepe05g1485 387 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1521 Hepe-Chr4:70741379 Hepe05g1485 Hepe-Chr5:64291328 3.71e-151 dispersed
Hepe05g1485 Hepe-Chr5:64291328 Hepe07g0479 Hepe-Chr7:4924730 7.44e-147 dispersed
Hepe03g1679 Hepe-Chr3:73621763 Hepe05g1485 Hepe-Chr5:64291328 1.45e-11 transposed
Hepe10g1960 Hepe-Chr10:56548708 Hepe05g1485 Hepe-Chr5:64291328 4.71e-149 transposed
Hepe03g0129 Hepe-Chr3:1546333 Hepe05g1485 Hepe-Chr5:64291328 1.98e-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55647 PF01167 Tub 3.10E-109 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1485 K19600 - csv:101217713 746.888