Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1485 ATGTCTTTGAAGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCGACGCCCGAACTCGGCGACGGTTTAGCTCAGAGTTGTTGGGCTCACATGCCTCACGAGTTGCTCAGAGAGGTTCTGATTAGAATCGAGACCTCTGAGAATGCTTGGCCTCCTCGGAAGACCGTCGTCTCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCTGGCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCTCAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATGTCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTGAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGTTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGCTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGTTATTCCTTCCTCTGCTATTAAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCCCGCCAAGTCGTATCGACTTTCTTCCATCGATGAGATTTTCCCGGTCAAAATCAAATCAAACAGACGAACAACCATCGGGACCTTCAACTAATCAGAAAGATGGAGTTCTGGTGCTTAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACTTGCTGGACCTGAGCATGAGAAGATCATCCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.65 MSLKSIIQEMRSRSRRVVQDGSTPELGDGLAQSCWAHMPHELLREVLIRIETSENAWPPRKTVVSCAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIMSLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRFVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDVIPSSAIKPGGVAPIQTEFPPSRIDFLPSMRFSRSKSNQTDEQPSGPSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 64291328 64296671 - Hsped.05g14850.1 Hepe05g1485 570750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1485 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Hepe05g1485 387 SUPERFAMILY F-box domain 30 78 IPR036047 GO:0005515(InterPro)
Hepe05g1485 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Hepe05g1485 387 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Hepe05g1485 387 Pfam Tub family 96 382 IPR000007 -
Hepe05g1485 387 MobiDBLite consensus disorder prediction 1 24 - -
Hepe05g1485 387 CDD F-box_AtTLP-like 35 79 - -
Hepe05g1485 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Hepe05g1485 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Hepe05g1485 387 Gene3D - 29 82 - -
Hepe05g1485 387 PANTHER TUBBY-RELATED 28 386 - -
Hepe05g1485 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Hepe05g1485 387 FunFam Tubby-like F-box protein 92 387 - -
Hepe05g1485 387 MobiDBLite consensus disorder prediction 275 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1485 K19600 - - csv:101217713 746.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1521 Hepe-Chr4:70741379 Hepe05g1485 Hepe-Chr5:64291328 3.71e-151 dispersed
Hepe05g1485 Hepe-Chr5:64291328 Hepe07g0479 Hepe-Chr7:4924730 7.44e-147 dispersed
Hepe03g1679 Hepe-Chr3:73621763 Hepe05g1485 Hepe-Chr5:64291328 1.45e-11 transposed
Hepe10g1960 Hepe-Chr10:56548708 Hepe05g1485 Hepe-Chr5:64291328 4.71e-149 transposed
Hepe03g0129 Hepe-Chr3:1546333 Hepe05g1485 Hepe-Chr5:64291328 1.98e-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT1G76900 71.6 3.6e-174 608.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G76900 70.6 2.4e-170 595.5
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT1G76900 68.2 5.6e-167 584.3
Hepe03g0129 . 13 387 TUB Transcription Factor Family AT1G76900 50.8 1.2e-113 407.1
Hepe05g1485 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 5.2e-112 401.7
Hepe07g0479 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 6.3e-102 367.5
Hepe02g2796 . 176 432 TUB Transcription Factor Family AT1G25280 69.9 4.1e-93 338.2
Hepe10g1960 . 173 430 TUB Transcription Factor Family AT1G25280 67.5 9.2e-93 337.0
Hepe07g0731 . 209 445 TUB Transcription Factor Family AT1G25280 55.8 2.9e-70 262.3
Hepe05g1485 . 154 387 TUB Transcription Factor Family AT1G25280 52.4 9.2e-69 257.3
Hepe03g0129 . 155 387 TUB Transcription Factor Family AT1G25280 53.9 1.2e-68 256.9
Hepe01g1672 . 181 408 TUB Transcription Factor Family AT1G25280 52.7 3.3e-66 248.8
Hepe04g1521 . 176 412 TUB Transcription Factor Family AT1G25280 52.8 1.2e-65 246.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT5G18680 62.5 4.3e-99 358.2
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT5G18680 61.5 1.2e-96 350.1
Hepe10g1960 . 112 430 TUB Transcription Factor Family AT5G18680 53.3 3.5e-85 312.0
Hepe02g2796 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 1.2e-82 303.5
Hepe07g0479 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 2.1e-82 302.8
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT5G18680 52.8 2.4e-78 289.3
Hepe01g1672 . 117 408 TUB Transcription Factor Family AT5G18680 50.3 5.6e-75 278.1
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G18280 58.3 3.0e-140 495.4
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G18280 61.5 5.6e-139 491.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G18280 57.1 9.0e-121 430.6
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.2e-118 421.8
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 6.7e-116 414.5
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 6.7e-116 414.5
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G18280 53.2 9.6e-115 410.6
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 9.0e-113 404.1
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G18280 52.0 3.6e-93 339.0
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G47900 68.5 3.5e-160 561.6
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G47900 68.0 4.6e-160 561.2
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G47900 55.2 2.4e-132 469.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G47900 55.9 2.4e-129 459.1
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G47900 54.3 4.6e-120 428.3
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G47900 51.5 2.8e-117 419.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G47900 55.3 3.1e-116 415.6
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G47900 51.2 3.4e-99 359.0
Hepe03g1679 . 82 307 TUB Transcription Factor Family AT1G16070 59.1 8.3e-71 264.2
Hepe07g0479 . 66 428 TUB Transcription Factor Family AT1G43640 67.5 4.4e-146 514.6
Hepe10g1960 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 5.7e-146 514.2
Hepe02g2796 . 65 432 TUB Transcription Factor Family AT1G43640 65.5 6.1e-140 494.2
Hepe03g0129 . 48 387 TUB Transcription Factor Family AT1G43640 52.6 4.0e-107 385.2
Hepe05g1485 . 49 387 TUB Transcription Factor Family AT1G43640 52.7 4.1e-104 375.2
Hepe01g1672 . 70 408 TUB Transcription Factor Family AT1G43640 50.7 6.2e-100 361.3
Hepe01g1672 . 34 408 TUB Transcription Factor Family AT1G47270 63.1 3.5e-133 471.9
Hepe04g1521 . 33 412 TUB Transcription Factor Family AT1G47270 59.2 4.5e-125 444.9
Hepe07g0731 . 35 445 TUB Transcription Factor Family AT1G47270 54.0 2.0e-117 419.5
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 7.3e-115 411.0
Hepe02g2796 . 48 432 TUB Transcription Factor Family AT1G47270 54.3 2.9e-111 399.1
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT1G47270 50.2 7.8e-109 391.0
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT1G47270 50.7 2.6e-104 375.9
Hepe07g0976 . 1 386 TUB Transcription Factor Family AT1G53320 72.0 2.0e-157 552.4
Hepe05g1485 . 33 387 TUB Transcription Factor Family AT1G53320 50.8 4.6e-98 355.1
Hepe07g0479 . 54 428 TUB Transcription Factor Family AT1G53320 50.3 1.6e-95 346.7
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 6.6e-97 350.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT3G06380 63.1 1.8e-94 342.8
Hepe07g0479 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 2.1e-82 302.8
Hepe02g2796 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 7.4e-80 294.3
Hepe10g1960 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 6.2e-79 291.2
Hepe04g1521 . 118 412 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe01g1672 . 121 408 TUB Transcription Factor Family AT3G06380 51.4 1.7e-76 283.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55647 PF01167 Tub 3.10E-109 CL0395 Hepe TF