Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1501 ATGTCTTCCTTAATGCATGGATCATTGCTGCAGACTATAGCAGATTGTGATCAAGGATTATTGAGGAGGGGAAAGTATCATTTGGGTCACACCCATCTTCTCAAAGAAAAACATTCATCTTTGAGGGCAAACAGAGGTGGAACTGGAAGAAGTAAAGGTATTTGCTGCCAAGACTTGCATATCAGTAGTCCAAAGCCTGAGAGACATGAGCCTCCCAATCGTCACGGTTCGAGAGCTGACGCGGTCCTTAGCCCAGTAATACCTACTACTAAGAAGAGAGTATACACTTTTGGAAAAGGAAGAAGTGAGGGTAACAAGAGCATGAAGTCATTGTTGGGAGGGAAGGGAGCAAACCTTGCAGAGATGGCGAGCATCCGATTGTCTGTTCCACCTGGACTCACCATCTCAACTGAAGCATGCCAAGAGTACCAGCAAAATGGAAATAGATTGCCAGAGGGCTTGTGGGAAGAGATACTGGAAGGCTTGGAAAGTGTTGAAAAGGACATGGGAGCTGTTCTTGGAGATCCTTCGAAGCCTCTCCTTCTCTCCGTTCGGTCTGGTGCTGCTATCTCAATGCCTGGAATGATGGATACTGTCCTTAACCTTGGATTAAATGATGAAGTGGTTGCTGGCTTGGCTGCAAAAAGTGGAGAGCGCTTTGCTTACGACTCTTATAGGCGCTTTCTTGACATGTTTGGAAATGTTGTGATGGGCATTTCACATTCTTTGTTTGAGGAGAAGTTGGAAAACTTGAAAATTGCAAAAGGAAAGGCACTCGATACTGACCTAACCGCCTCTGATCTTAAGGAGCTTGTGGAACAATACAAAGACACTTACGTCGAAGCTAAGGGCGAGAAGTTTCCTTCAGACCCAAAACAACAGTTGCAATTAGCTGTCAAAGCAGTTTTTGATTCTTGGGATAGCCCAAGGGCGAACAAATATCGAAGCATCAATCAAATTACTGGGTTGAAGGGAACTGCTGTGAACATTCAATCCATGGTGTTTGGAAACATGGGACAAACTTCTGGGACAGGAGTATTATTCACTAGAAATCCAAGTACTGGTGAAAATAAGCTGTATGGAGAGTTCCTCATCAATGCTCAGGGCGAGGATGTAGTTGCGGGGATTCGGACGCCAGAAGACTTGGATACCATGAAAGATTGCATGCCTGAAGCTTACAAAGAGTTGGTTGAGAACTGTGAAATTTTAGAGAGACATTACAAAGACATGATGGATATTGAGTTCACAGTTCAAGAAAATAGGCTATGGATGCTGCAATGTCGTTCCGGAAAACGTACAGGTAAAGGTGCTGTGAAGATAGCTGTAGATTTGGTGAATGAAGGACTTGTTGACACTCGAACTGCAATTAAGATGGTTGAGCCGCAACATCTCGACCAACTTCTTCATCCTCAGTTTGAAGATCCCTCTGCTTACAAAGACCAAGTACTTGCAACAGGCTTGCCTGCATCTCCCGGTGCCGCAGTGGGGCAGATAGTATTCAGTGCCGATGACGCTGAAGCCTGGCATGCTCAGGGAAAGAGTGCCATCTTGGTAAGGGCAGAGACCAGCCCAGAGGATGTTGGTGGAATGCATGCAGCTACAGGTATTTTGACAGCTAGAGGTGGAATGACTTCTCATGCTGCTGTCGTCGCTCGTGGATGGGGAAAATGCTGCGTCTCTGGTTGTTCGGACATCAGAGTAAACGACTCTGAGAGGGTTCTTATCATTGGAGATTTGGTAATCAATGAAGGTGACTGGATATCCCTCAATGGCTCTACAGGTGAAGTGATATTGGGCAAGCAGCCACTCTCTCCCCCAGCTTTAAGTCCGGATTTGGAGATCTTTATGTCTTGGGCTGATCAAATACGACGTCTGAAGGTTATGGCCAATGCTGACACTCCCGAAGACGCTCTCACAGCTCGCAACAATGGCGCCCAAGGAATCGGCTTGTGCAGGACAGAGCATATGTTCTTTGCATCAGATGAGAGGATCCGAGCTGTAAGGAAGATGATAATGGCAGTTACAACCGAGCAAAGAAAGGCGGCTTTGGACTTGTTACTACCTTATCAAAGATCTGACTTTGAGGGAATTTTCCGGGCGATGGATGGTCTTCCAGTGACTATTAGACTGTTGGACCCTCCACTCCATGAATTCCTTCCGGAAGGCGATTTGGAAGAGATTGTCAAAGGACTAACTGCAGAGACTGGAATGAGTGAAGATGAAGTGTTCTCTAGAATTGAGAAACTCTCGGAAGTTAACCCAATGCTCGGTTTTCGCGGTTGCAGGCTCGGGATATCGTACCCAGAGCTGACGGAAATGCAAGCTCGTGCAATCTTTCAGGCTGCTATCACAATGAGCAGTCAAGGAATTAAAGTTTTTCCTGAGATAATGGTTCCATTGGTCGGAACACCGCAAGAACTTGGACATCAAGTCAGCTCGATTCGCCACGTTGCCGAGAAGGTGTTCTCAGAGATGGGTTCCTCCTTAAATTACAAAGTAGGAACCATGATTGAAATTCCAAGAGCTGCTCTGGTTGCAGATGAGATTGCAAAGGAAGCAGAGTTCTTCTCATTTGGGACCAATGATCTTACACAAATGACTTTTGGATACAGTAGAGATGATGTTGGCAAGTTTCTTCCCATTTATATATCCAAAGGAATTCTGCAAAATGACCCTTTTGAGGTGCTTGACCAGAAAGGAGTTGGACAGCTGATCAAGATGGCTACAGAAAAAGGGAGGGCAGCCAGGCCAAGTTTGAAGGTTGGAATTTGTGGAGAACATGGTGGAGAGCCTTCATCTGTTGCATTCTTTGCAGAGGCTGGACTTGACTATGTTTCCTGTTCTCCTTTCAGAGTTCCAGTTGCAAGATTGGCTGCAGCCCAAGTTGCTGTTTAA 2895 45.84 MSSLMHGSLLQTIADCDQGLLRRGKYHLGHTHLLKEKHSSLRANRGGTGRSKGICCQDLHISSPKPERHEPPNRHGSRADAVLSPVIPTTKKRVYTFGKGRSEGNKSMKSLLGGKGANLAEMASIRLSVPPGLTISTEACQEYQQNGNRLPEGLWEEILEGLESVEKDMGAVLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGNVVMGISHSLFEEKLENLKIAKGKALDTDLTASDLKELVEQYKDTYVEAKGEKFPSDPKQQLQLAVKAVFDSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGQTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDLDTMKDCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVNEGLVDTRTAIKMVEPQHLDQLLHPQFEDPSAYKDQVLATGLPASPGAAVGQIVFSADDAEAWHAQGKSAILVRAETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDSERVLIIGDLVINEGDWISLNGSTGEVILGKQPLSPPALSPDLEIFMSWADQIRRLKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIRAVRKMIMAVTTEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEEIVKGLTAETGMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAITMSSQGIKVFPEIMVPLVGTPQELGHQVSSIRHVAEKVFSEMGSSLNYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYISKGILQNDPFEVLDQKGVGQLIKMATEKGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPVARLAAAQVAV 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 64484003 64492442 - Hsped.05g15010.1 Hepe05g1501 570766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1501 964 SUPERFAMILY Phosphohistidine domain 478 602 IPR036637 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe05g1501 964 Gene3D - 94 334 IPR013815 GO:0005524(InterPro)
Hepe05g1501 964 FunFam Pyruvate, phosphate dikinase, chloroplastic 335 432 - -
Hepe05g1501 964 Gene3D Pyruvate Phosphate Dikinase, domain 2 433 621 - -
Hepe05g1501 964 MobiDBLite consensus disorder prediction 62 76 - -
Hepe05g1501 964 Pfam PEP-utilising enzyme, mobile domain 514 594 IPR008279 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe05g1501 964 Coils Coil 265 285 - -
Hepe05g1501 964 Gene3D - 335 432 - -
Hepe05g1501 964 Pfam PEP-utilising enzyme, PEP-binding domain 613 963 IPR000121 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe05g1501 964 FunFam Pyruvate, phosphate dikinase, chloroplastic 474 600 - -
Hepe05g1501 964 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 392 446 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Hepe05g1501 964 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 150 383 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Hepe05g1501 964 MobiDBLite consensus disorder prediction 42 79 - -
Hepe05g1501 964 FunFam Pyruvate, phosphate dikinase, chloroplastic 624 964 - -
Hepe05g1501 964 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 91 470 - -
Hepe05g1501 964 Gene3D Phosphohistidine domain 474 600 - -
Hepe05g1501 964 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 611 963 IPR015813 GO:0003824(InterPro)
Hepe05g1501 964 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 89 964 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Hepe05g1501 964 ProSitePatterns PEP-utilizing enzymes signature 2. 854 872 IPR023151 GO:0016772(InterPro)
Hepe05g1501 964 Gene3D - 203 287 - -
Hepe05g1501 964 NCBIfam pyruvate, phosphate dikinase 91 964 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Hepe05g1501 964 PIRSF PPDK 90 964 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Hepe05g1501 964 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 541 552 IPR018274 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe05g1501 964 Gene3D - 624 964 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1501 K01006 - - csv:101214608 1815.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32