Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1522 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCCAAACCCATCTCCTCCGCCTCCTCCGCCGTACCTTTCTTCCTCCTCTTTCTATTACCCTTCTGAACCCCCATCCCTTTCTCCCACTCCAGCTCCTCCTCCTCCGCCGCAGACCCATCAGTTCCCAAATTCCCACTCTCCCCCGTCTCATAGCCACCCTTACGGTCCAACTCCACAGCCGCTACCTCTGCCGCCGATTCCTCCGCCCCCTGCTCCTCACTCCTATTACTTTTCCGGTGGGTTCAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGCCCCAAATTCGGCCGGCGATGGGTCCGCCGTTGCTTCCGTCCCCGCCTCTGCCGTTCGTGGAGCATCGGCAGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGACGAGCAGAACCCTGATCAGCACTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCATTATATCCCGAGGCCTTTGAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTTGGATTTTTCGAGTTGGACGACCTCTCAAAACCTTCACCTGCCGAAGACACTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAGTCCAATGATGAACGAATTGGTGAGCCACAACCAGATAATTCACATATGCAAATTACTCAAGCTGTTCTAGAGAAGAAAAATGGCGGTCCTTTCCAAGTTAGAGTGATTAGGCAGCTACTATGGATTGATGGAGTGCGATATGAGTTGCGTGAGATATTTGGAATAGGGAGTTCGTCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAACAATAGCGACCAGTGA 1176 47.45 MGISWSNRRRNNYLPNPSPPPPPPYLSSSSFYYPSEPPSLSPTPAPPPPPQTHQFPNSHSPPSHSHPYGPTPQPLPLPPIPPPPAPHSYYFSGGFNSCNYGNSSMGRFNFHPYYANQSNGWPQIRPAMGPPLLPSPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPLYPEAFEPVKIPFQKGPAQKFFQPVGTGFDFGFFELDDLSKPSPAEDTFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 64727939 64732064 + Hsped.05g15220.1 Hepe05g1522 570787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1522 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 385 IPR013083 -
Hepe05g1522 391 ProSiteProfiles Zinc finger RING-type profile. 336 375 IPR001841 -
Hepe05g1522 391 SMART ring_2 336 374 IPR001841 -
Hepe05g1522 391 Pfam Zinc finger, C3HC4 type (RING finger) 334 380 - -
Hepe05g1522 391 SUPERFAMILY RING/U-box 335 381 - -
Hepe05g1522 391 MobiDBLite consensus disorder prediction 1 81 - -
Hepe05g1522 391 MobiDBLite consensus disorder prediction 37 56 - -
Hepe05g1522 391 CDD mRING-HC-C3HC5_MGRN1-like 334 375 IPR045195 -
Hepe05g1522 391 PANTHER MAHOGUNIN 1 389 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Hepe05g1522 391 MobiDBLite consensus disorder prediction 63 81 - -
Hepe05g1522 391 MobiDBLite consensus disorder prediction 14 28 - -
Hepe05g1522 391 FunFam probable E3 ubiquitin-protein ligase LOG2 320 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0254 Hepe-Chr5:3014666 Hepe05g1522 Hepe-Chr5:64727939 1.71e-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1522 K27504 - csv:101203938 608.601