Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1544 ATGCAGAAGATTATGGCTGAACCAATATACACTGTAGCTTCTGATAGTGAAACCACTGGGGAGGAAAAACCAACATCAACCTTTCCGGAGATAGCGGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAGTCTGGAATGGATCTCAGGTAGAGCTTCTTAAGAACACTAGAAATCAGAAAATTATGAGATCATATGTCACCTTCAAGGATGACACTCCTTCTGGAGGAGTTAGTAATGAGCTAAGCCATGAGTATGAAATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGGGTTGACACCGACCCAGTCGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTATTGCAGCTTTGGTGAATAATGTATGGAGATCTACTACTCCTGAAGAAGTTCTCGCGATCTTTCTCGTCGAACTGAAAATGATGGCTGAATATCAACTAAAGCGGCCAGTTAGAAATGTTGTTTTGACAATTCCAGTTTCATTCAGCCGGTTCCAGCTTACTCGGGTTGAACGAGCTTGTGCAATGGCTGGCCTTCAAGTCAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTATATGCCCAACAACAGCAGCTGGCTGTACATGAGAACATGGGCAGTGGAAGTGAAAAAATTGCCCTTATTTTCAACATGGGCGCTGGCTATTGTGATGTTGCTGTATCAGCTACAGGCGGAGGAGTGTCGCAGATCAGAGCCCTGGCTGGAAGTCCTATTGGAGGTGAAGATCTACTTCAAAATACCATGAAGTATCTTTTGCCAAATTCTGAATCTATATTCTCACACCGTGGAATAGATGAGATCAGAAGGATGGGATTGCTCCGAGTTGCGACCCAAGATGCTATCCACAAGCTTTCATTCCAGGCAAATGTTCAAATTGATGTCAACTTTGGAAATGGATCAAAAATATGCAAGGTCCTAAATCGCGACGAGTTTGAGATGGTGAACAACAAGGTGTTTGAGAAATGTGAGAACCTTGTAAAGCAATGCTTACATGATGCGAGAGTAGAAATTGGGGACGTGAGTGATGTGGTAGTCGTTGGTGGATGTTCATACATACCAAAAATCAGAAATCTTCTGATGGAAATAACTAAAAAGAAGGCACTTTATGAAGGAATGGATCCTTTAGAAGCTGCTGTTTCTGGTGCAGCCTTAGAAGGTGCAGTGGCATCAGGCATAGGCGATCCGTTTGGAAGTTTAGATCTTCTTAGCATCCAAGCGACGCCTCTCGCCATCGGAATTCGAGCTGATGGGAACAGCCTCATTCCGATTATTCCCAAGAACACCACAGTGCCAGCACGCAAGGAGTTGGTTTTTACGACTGTTCAAGATAATCAAAGCGAGGCGCTGATCGTTGTCTATGAAGGCGAAGAAACAAGAGCAGAGGAAAATCATCTGCTTGGCTATTTCAAGATCATTGGAATTCCACCATCACCCAAAGGAGTCCCTAACATTACTATTTGCATTGACATTGACTCCTCAAATATGCTTAGAGTTCTAGCTGGGGCAACACTACCTGGTGCCCAACACCCTGCAACTCCTTTCATGGAAGTCAAGATGCCGACGGTCGACAATGGACATGGCTTGTGTGCAGAAGCTCTGCATGGAAAATACGGTGCCGCCATGGACTTGGTTACATTGCGGAAGAAAAGCTAG 1728 44.1 MQKIMAEPIYTVASDSETTGEEKPTSTFPEIAVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDDTPSGGVSNELSHEYEMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFIAALVNNVWRSTTPEEVLAIFLVELKMMAEYQLKRPVRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQLAVHENMGSGSEKIALIFNMGAGYCDVAVSATGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQANVQIDVNFGNGSKICKVLNRDEFEMVNNKVFEKCENLVKQCLHDARVEIGDVSDVVVVGGCSYIPKIRNLLMEITKKKALYEGMDPLEAAVSGAALEGAVASGIGDPFGSLDLLSIQATPLAIGIRADGNSLIPIIPKNTTVPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPSPKGVPNITICIDIDSSNMLRVLAGATLPGAQHPATPFMEVKMPTVDNGHGLCAEALHGKYGAAMDLVTLRKKS 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65063270 65066555 + Hsped.05g15440.1 Hepe05g1544 570809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1544 575 CDD HSP70_NBD 33 412 - -
Hepe05g1544 575 Gene3D - 216 394 - -
Hepe05g1544 575 PANTHER HEAT SHOCK PROTEIN 70KDA 32 525 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Hepe05g1544 575 SUPERFAMILY Actin-like ATPase domain 31 213 IPR043129 -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 506 522 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 397 417 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 31 44 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 171 191 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 425 444 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 59 71 - -
Hepe05g1544 575 PRINTS 70kDa heat shock protein signature 365 381 - -
Hepe05g1544 575 Pfam Hsp70 protein 32 529 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Hepe05g1544 575 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 427 526 IPR029047 -
Hepe05g1544 575 FunFam Heat shock 70 kDa protein 8 96 151 - -
Hepe05g1544 575 SUPERFAMILY Actin-like ATPase domain 228 413 IPR043129 -
Hepe05g1544 575 FunFam Heat shock 70 kDa protein 8 420 535 - -
Hepe05g1544 575 Gene3D - 96 151 - -
Hepe05g1544 575 Gene3D - 33 412 - -
Hepe05g1544 575 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 423 537 IPR029047 -
Hepe05g1544 575 FunFam Heat shock 70 kDa protein 8 265 346 - -
Hepe05g1544 575 Gene3D Actin; Chain A, domain 4 265 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1544 K09489 - - csv:101206971 1045.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1544 Hepe-Chr5:65063270 Hepe09g0559 Hepe-Chr9:5284491 2.00e-82 dispersed
Hepe05g1544 Hepe-Chr5:65063270 Hepe02g3024 Hepe-Chr2:79397967 2.92e-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32