Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1549 ATGTTCTTAAGGAGAGGATTTGCTTTTATTAGCCCTCACTTTGTTTTGAGGGCCTGCAACTTTTGCTCAAAAGCATTGCCCAAGGGAATCCTTGGAAGCGGGAATGAAAGGGTAGCTCATTCAGATAGCATTGCAAATGGTTCATCCAGGCCTCAGCTATCTCCATTGTTCCCTGATGGTAAACCTCATTCAGCTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGCAGTTTCATGTGGTTTAGCAGGAGCATGGGAAGGGAGAGAGAAGGGTTGGTCTGGCTTTGAAAATAGATACTCCTTAGAGGATGAGGATCATGACCCAAGTGTTTATTGTGATTCAGATTTTGAGGATATTGACAACATGAGAATACGTGGAAATCTCTTCTATAAACTTGATCGGGGTTCCAAAGAGTTTGAAGAATATAGCTTTGAATTTCACCGGAAGAACAAATCTATAAAGGAAAAGGAAGCTATGCAGCAAAGCAGAAGCAAAGTCAATGATAAACCCGATAATCGTTTGGCAAGCGGCCATGTAAAACTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAACGATGACATTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTCACTGCTCCTTACCACGAGCCATTTTGTCTGGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGGGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTAAAGACATGAAATTTGACCTGACTTCAAGGAGGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGACATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCATTGATAGTGGGATTAATGTGAAGGTAAAGATTAAGCAGCAAAAGAGACCCAGAAAAGTTGGAAGTCTACCTTTTAGCATAGTCCGATGA 1014 42.5 MFLRRGFAFISPHFVLRACNFCSKALPKGILGSGNERVAHSDSIANGSSRPQLSPLFPDGKPHSAAYDVELVDDDTWAVSCGLAGAWEGREKGWSGFENRYSLEDEDHDPSVYCDSDFEDIDNMRIRGNLFYKLDRGSKEFEEYSFEFHRKNKSIKEKEAMQQSRSKVNDKPDNRLASGHVKLPEHVKNKYVIVERENDDIEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRGTSKVVAVAHSISKDMKFDLTSRRDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDSGINVKVKIKQQKRPRKVGSLPFSIVR 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65118755 65119768 + Hsped.05g15490.1 Hepe05g1549 570814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1549 337 CDD Ribosomal_L18_L5e 217 313 - -
Hepe05g1549 337 Gene3D Ribosomal protein S11 187 321 IPR036967 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe05g1549 337 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 120 316 IPR005484 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0008097(PANTHER)
Hepe05g1549 337 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 223 314 IPR005484 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hepe05g1549 337 SUPERFAMILY Translational machinery components 203 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1549 K02881 - - csv:101213193 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1549 Hepe-Chr5:65118755 Hepe05g1815 Hepe-Chr5:68402059 1.82e-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g503 . . . . . . . . . . Cma06g01412 . Car06g01218 . . . . Bhi01g00816 . . . Hepe05g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01414 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50