Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1573 ATGGTATCACAATCACAAATTCGCTTCATTTTCTCCTTCCGAAACTCCCTTCGTACCTATTCCTCAGCCAAACCTCTCTGCACCATTACCGAATCGACCCAAGTCTCCGAGTCCTCCGAGCTTCCAGACTGGGTAAAGTTCTTCGATACCAAAACTTCTTCACATTCAGATTCCGACGACGACGCCTTCGTTATTCCTCCATTGGCGCATTGGCTCGACTCCCAAAGGCTCGAAGACCACAACAAAGCTGTCAAGAAGAAACTCAGTGAGACAAGCGAAAGCGAAGTCGACAAAATCAGTATAATGCTAAAGAATCGATACCCATCACCTGAGAACGTTGCAGAAGCTTTGAATGGAATGGCTTACAGGGTTTCGAACGCCTTGGTTTCACAGCTGCTGAAGAGATTTGGGAATGATTGGATCCCAGCTTATGGAATTTTCAAGTGGGCAAAAGAACAAACACCTTATGTGCATTCACCTGAATCATATAACTCCATGGTTGATATCTTGGGGAGAGCTAAAAAGTTCAGATTTATGTGGGAATTGGTGGATGAGATGAATCATTTATCTGGGTTTGTGAGTTTGGAGACGATGAGTAAGGTTATTAGAAGGCTTGCGAGAGCTGGTAGATATCAGGAAGCAATTGAGGCATTCCGTGGGATGGAGAAATATGGAGTTAGTAAAGACACAGCAGCCATGAATGTGTTGATGGGTGCATTAGTCAAGGAGGGTAGTGTTGAAGATGCCCACAATGTGTTTGAAGAATTGAAGGGTTCGTCAATACCTTTCAATTTGAGCTCTTTAAATGTTCTAATACATGGGTACTGCAAAGCTAGGAAGCTAGATGAGGCATGGAAGATCATGGAAGAAGTTGAGAAACATGGATTTGAACCTGATGTGGTTTCCTACACTGCTTTCATCGAAGCTCATTGCCGCGACAAGGACTTCCGAAAGGTGGATGAGATTCTGCTGCAAATGGAACAAAAGGGATGCAAGCCTAATGCAGTAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATGGATGAAGCTATAAAGATATACGAGAAGATGAAGAACGAGGGTTGTGTGCCGGATAGTTCATTCTACAGCTCTCTGATCTTCATTCTTGGTAAAGCTGGTAGGCTCAAAGATGTTAAGGAGATAGTAGAAGACATGACCAAGCAGGGAGTTAATCCAGATGTGTTGACATATAACACTATGATATCTTGTGCTTGTGCACATTCGGAGGAAGAGACAGCTCTAAGATTGCTACGAAAAATGGAGGAGGATTCATGCAAGCCAGAACTCAAGACTTACCACCCTTTGTTGAAGATGTTCTGCAAAAAGAAGAGAATGAAGGTGCTGAAGCTTTTGTTAGATCATATGTTCAAGAATGATGTGAGTATTGAAGCTGGGACTTACTCGATTCTGGTGCGTGGTATGTACGAGAATGGGAAACTCCATCTTGCTTGCTCGTTCTTCGGGGAAATGGTGTCCAAGGGAATGGTTCCTAAAGACTCCACATTCAAGATGTTGAAGGAAGAACTTGAGAAGAAAAGTATGTTAGAAGAAATGAAAATCATTGAGAAGTTGATGTCCTATGCAACAGAGCAAGATACAAGCTAA 1638 42.74 MVSQSQIRFIFSFRNSLRTYSSAKPLCTITESTQVSESSELPDWVKFFDTKTSSHSDSDDDAFVIPPLAHWLDSQRLEDHNKAVKKKLSETSESEVDKISIMLKNRYPSPENVAEALNGMAYRVSNALVSQLLKRFGNDWIPAYGIFKWAKEQTPYVHSPESYNSMVDILGRAKKFRFMWELVDEMNHLSGFVSLETMSKVIRRLARAGRYQEAIEAFRGMEKYGVSKDTAAMNVLMGALVKEGSVEDAHNVFEELKGSSIPFNLSSLNVLIHGYCKARKLDEAWKIMEEVEKHGFEPDVVSYTAFIEAHCRDKDFRKVDEILLQMEQKGCKPNAVTFTIIMHALGKAKQMDEAIKIYEKMKNEGCVPDSSFYSSLIFILGKAGRLKDVKEIVEDMTKQGVNPDVLTYNTMISCACAHSEEETALRLLRKMEEDSCKPELKTYHPLLKMFCKKKRMKVLKLLLDHMFKNDVSIEAGTYSILVRGMYENGKLHLACSFFGEMVSKGMVPKDSTFKMLKEELEKKSMLEEMKIIEKLMSYATEQDTS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65307501 65309138 - Hsped.05g15730.1 Hepe05g1573 570838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Hepe05g1573 545 Gene3D Tetratricopeptide repeat domain 259 324 IPR011990 GO:0005515(InterPro)
Hepe05g1573 545 Gene3D Tetratricopeptide repeat domain 96 258 IPR011990 GO:0005515(InterPro)
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Hepe05g1573 545 Pfam Pentacotripeptide-repeat region of PRORP 347 518 IPR033443 -
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Hepe05g1573 545 Gene3D Tetratricopeptide repeat domain 420 544 IPR011990 GO:0005515(InterPro)
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 162 192 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 234 262 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 199 229 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 477 508 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 373 405 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 301 335 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 407 438 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 267 300 IPR002885 -
Hepe05g1573 545 NCBIfam pentatricopeptide repeat 336 370 IPR002885 -
Hepe05g1573 545 SUPERFAMILY TPR-like 138 361 IPR011990 GO:0005515(InterPro)
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Hepe05g1573 545 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 112 416 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Hepe05g1573 545 Pfam PPR repeat family 267 312 IPR002885 -
Hepe05g1573 545 Gene3D Tetratricopeptide repeat domain 325 419 IPR011990 GO:0005515(InterPro)
Hepe05g1573 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Hepe05g1573 545 Pfam PPR repeat 233 259 IPR002885 -
Hepe05g1573 545 Pfam PPR repeat 199 226 IPR002885 -
Hepe05g1573 545 Pfam PPR repeat 162 186 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1573 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1648 Hepe-Chr3:73340600 Hepe05g1573 Hepe-Chr5:65307501 3.33e-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21