Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1576 ATGTATGGATTTCAGACGACTGTTGCCACTCCGACTTGTGCAGAGGCACGTGCGATTTTTGAAGGCATTCGACTTGCCCAACAAATGGGTTTCTTTAAACTCGTCGTTCTTTCGAACTCCCTAATTAACATTAACATGTTAAACGGGATTGAGACTGTGCTTGAAGAAACTCATACCTACATTTCTAATATTTTGCACTTCAAAGATGTATTCCAACATATCTTGTTTTCTCATGTTCCAAGGGTCCACAATGTTATGGCCCATGAGTTAGCAAGACGTGGTGTTCTTAGAGAATCCGCTTTATGGACTCATGATTTTCCTGATTGGCTTACAAGCCTATTAGTATCTACTTCCCCCTTGGGGAATCGCCAATGGTGCTTCTATCTCTTTCTTCTACCTTTGAATCCTGAAAAAGTATACCCCACTTGCCGCCTGTTTCATGGTCGTATTTCATCATCATCATCAATCGCTATCTTAGTCAACATTTACGGCCTTTTTCTTCGACTCTTCATCTTTACTGAACGGTTCCTTTTAGGGTTTGCGTTTGTGGTTCTTGTGGGGCTTTTTTTCTTCTTCTGCGGGTCCGATTTTGCTGAGAGGATTCCTTGTATTCAAGGTGTTCTATTTGAGTTATCTGTGTCGATCTTAGCTATGGATTCAAAAGGAAACGATATGGGAGGTATTACGATCCCACAGGAGACAGGGAGCGAGGATAGACCTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATTTTCAGAGCAGATAAGATTGATCTGAAAAACCTAGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAAGACCGTTGATACTCAAAAGCCTAAGGAGGAGTGGGAGATTGATTTGTCTAAACTTGATATCCGATATGTTGTTGCTCACGGGACGTACGGAACAGTATTCAGGGGTGCATATGACGTTCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACAACTGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTCACAAAGTTTGTTGGAGCTTCGATGGGAGCTACAAATCTTAAGATTCCTTCAAAAGGTGCTTCAATGGATGCTCAAAATTCCCTTCCATCTAGGGCTTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACCTGATAAGGTGCAGGAAAAGGAAACTTCCCTTTAAGGTTGTGATTCAATTAGCTTTGGATCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGCTAGATGGTCATAGAACTCTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGGAGATGTGATGTCTATAGCTTTGGCATCTGCTTATGGGAGACATACTGCTGCGATATGCCTTACCCCGATCTTAGTTTCGCTGATGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCGATATCCCGAAATGCTGTCCAAGTTCTCTGGCTAATGTGATGAAGAAATGCTGGGATGGCAATCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTAGAAGCCATTGATACAACTAAAGGAGGTGGGATGGTTCCTGAAGACCAACTCTCTGGCTGCTTCTGTTTCAGCGCGCCCCGCGGTCCGTAA 1824 44.08 MYGFQTTVATPTCAEARAIFEGIRLAQQMGFFKLVVLSNSLININMLNGIETVLEETHTYISNILHFKDVFQHILFSHVPRVHNVMAHELARRGVLRESALWTHDFPDWLTSLLVSTSPLGNRQWCFYLFLLPLNPEKVYPTCRLFHGRISSSSSIAILVNIYGLFLRLFIFTERFLLGFAFVVLVGLFFFFCGSDFAERIPCIQGVLFELSVSILAMDSKGNDMGGITIPQETGSEDRPLNSKVAGMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSKTVDTQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGAYDVQDVAVKLLDWGEDGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKGASMDAQNSLPSRACCVVVEYLPGGTLKQYLIRCRKRKLPFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDGHRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWETYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEAIDTTKGGGMVPEDQLSGCFCFSAPRGP 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65319680 65324811 - Hsped.05g15760.1 Hepe05g1576 570841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1576 607 SMART serkin_6 300 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 Gene3D Transferase(Phosphotransferase) domain 1 404 590 - -
Hepe05g1576 607 Pfam Protein tyrosine and serine/threonine kinase 304 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 FunFam Kinase suppressor of Ras 1 289 383 - -
Hepe05g1576 607 CDD STKc_MAP3K-like 306 578 - -
Hepe05g1576 607 Pfam Reverse transcriptase-like 7 93 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Hepe05g1576 607 SUPERFAMILY Ribonuclease H-like 6 97 IPR012337 -
Hepe05g1576 607 SUPERFAMILY Protein kinase-like (PK-like) 280 578 IPR011009 -
Hepe05g1576 607 CDD RNase_H_like 8 92 IPR044730 -
Hepe05g1576 607 FunFam Serine/threonine-protein kinase HT1 404 589 - -
Hepe05g1576 607 Gene3D Phosphorylase Kinase; domain 1 289 381 - -
Hepe05g1576 607 ProSiteProfiles Protein kinase domain profile. 300 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 PRINTS Tyrosine kinase catalytic domain signature 505 527 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 PRINTS Tyrosine kinase catalytic domain signature 401 414 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 PRINTS Tyrosine kinase catalytic domain signature 439 457 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 PRINTS Tyrosine kinase catalytic domain signature 549 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1576 607 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 246 579 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Hepe05g1576 607 Gene3D - 2 95 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1834 Hepe-Chr2:28060911 Hepe05g1576 Hepe-Chr5:65319680 2.28e-186 dispersed
Hepe05g1576 Hepe-Chr5:65319680 Hepe09g0193 Hepe-Chr9:1528848 1.58e-182 dispersed
Hepe03g0244 Hepe-Chr3:3094195 Hepe05g1576 Hepe-Chr5:65319680 3.01e-68 transposed
Hepe03g2024 Hepe-Chr3:77558104 Hepe05g1576 Hepe-Chr5:65319680 7.37e-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72830 PF07714 PK_Tyr_Ser-Thr 3.90E-56 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1576 - - - 0.0