Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1580 ATGAAAACTTCAAACCCATTTCTCCCAAAATCTCTCCTCCTCATCTCCATTCTCCTCCTCCTCCCCAAACCTTCTGATCAAGCATCTCCGGCGCCATCGCCGTCTCCGTCACCACCGCCATTTCTCCCGAACCCGAGACTCCTCAAGGCCTACACCGCTCTCCAAGCTTGGAAACACGCCATCACCGCCGACCCGAACAACTTCACCGTCGACTGGTACGGCCCCAACGTCTGCAACTACTCCGGCGTCTTCTGCGCTCCCGCCCCCGATGATCCCTACATCCTCACCGTCGCCGGTATCGACGTCAACCACGCCAACCTCTCGGGCACCCTGCCCGATGACCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAACTCCAATCGCTTCTGTGGCACCATCCCCATTTCCTTCCGGTACCTCACTCTCCTCTTCGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCATCTGTTGTTTTATCTCTCCCATCTCTCAAATTCCTCGACATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAATATCTCCCTGCCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAGCACACTCAATGAAATTATAATCACCAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCACCGTCTTCGATGTCAGTGATAACAATCTCGTCGGACCGTTGCCGGACACGATTTCCGGAATGAAGAAATTGGAGCAGTTAAACGTCGCACATAACCAATTATCCGGCGAAATTCCGGCAAGTATCTGCTCGCTACCGAAATTGCAGAATTTCACCTACTCGTATAATTTCTTCTGTGGTGAGCCGTCGGTGTGCCTGAAACTTCCGGCCAGTGATGACCGGGAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCCGAGGAATGTAAAGCTTTCTACTCCTACCCTGTTGATTGCGGCGTCTTTGGCTGTACTCGTCGGCCGCCACCACCACCCCCTCCGCCGCCGCCGCCACCACCACCACCACCGCCGCCGCCGCCGCCGCCTCCTCCTTATTATCAGTATCCGTAA 1206 53.32 MKTSNPFLPKSLLLISILLLLPKPSDQASPAPSPSPSPPPFLPNPRLLKAYTALQAWKHAITADPNNFTVDWYGPNVCNYSGVFCAPAPDDPYILTVAGIDVNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPISFRYLTLLFELDLSNNDFSGEFPSVVLSLPSLKFLDIRFNKFHGDLPSPLFDMKLDALFINNNDFNISLPENIGNSPVSVLVFANNNINGCLPSSLSNMNSTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPDTISGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCGEPSVCLKLPASDDRENCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPPPPPPPPPPPPPPPPPPPYYQYP 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65390959 65392164 - Hsped.05g15800.1 Hepe05g1580 570845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1580 401 Gene3D Ribonuclease Inhibitor 49 339 IPR032675 -
Hepe05g1580 401 MobiDBLite consensus disorder prediction 371 401 - -
Hepe05g1580 401 Pfam Leucine rich repeat N-terminal domain 52 85 IPR013210 -
Hepe05g1580 401 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 236 325 - -
Hepe05g1580 401 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515(InterPro)
Hepe05g1580 401 FunFam Leucine-rich repeat extensin-like protein 1 51 212 - -
Hepe05g1580 401 SUPERFAMILY L domain-like 50 333 - -
Hepe05g1580 401 Pfam Leucine Rich Repeat 168 188 IPR001611 GO:0005515(InterPro)
Hepe05g1580 401 Pfam Leucine Rich Repeat 145 163 IPR001611 GO:0005515(InterPro)
Hepe05g1580 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 38 393 IPR051582 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1580 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1580 Hepe-Chr5:65390959 Hepe08g2577 Hepe-Chr8:67536518 4.13e-36 dispersed
Hepe02g0129 Hepe-Chr2:1454145 Hepe05g1580 Hepe-Chr5:65390959 1.00e-37 transposed
Hepe05g1580 Hepe-Chr5:65390959 Hepe09g0745 Hepe-Chr9:7134047 2.33e-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0745 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 5.1e-43 173.3
Hepe02g0129 . 55 381 Leucine-rich Repeat extension Gene Families AT1G62440 57.2 7.2e-37 152.9
Hepe08g2577 . 64 233 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.6e-36 150.6
Hepe09g0745 . 16 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.0 1.3e-67 255.0
Hepe08g2577 . 30 415 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.1e-63 241.9
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.5e-39 161.8
Hepe03g0572 . 20 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.3 2.2e-38 157.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT4G13340 60.6 8.2e-38 156.0
Hepe05g1580 . 44 371 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 2.0e-36 151.4
Hepe09g0745 . 19 410 Leucine-rich Repeat extension Gene Families AT3G24480 70.7 3.3e-72 269.6
Hepe08g2577 . 26 411 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 7.2e-67 251.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 2.2e-39 160.6
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 3.7e-39 159.8
Hepe03g0572 . 24 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.8e-39 159.5
Hepe05g1580 . 40 370 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 8.1e-52 201.8
Hepe02g0129 . 54 381 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 8.1e-44 175.3
Hepe09g0745 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.3e-38 157.9
Hepe09g0745 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 1.0e-40 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37