Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1592 ATGCAGCTTCTCAACTCTGAAGAAACGGTCGCCGACTCCTCGGAAACCGGCCTTGTGGAGGCAAGGAATTTGAAATCTTCTAAGTTGCTGGCTTCTTGTGAGGATGATGATGGAAATGATGCAGATGATTTGGTTCTTGATGTCTCCGGGAGAAACTTGGATTCCCAATTCTTGGAGGGCTCCAATAGCTCAGTGAAGGGTCTGTATGTATTTAGGAATGCGTTCAATTTGATCCCGAAATCAGTTGGCGACTTTAGAGAATTGAGAATGCTTAAGTTCTTTGGAAATGAGATTAACTTGTTTCCGCCCGAGTTGGAGAACTTTGTGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGGTTGTCATTACACAAATTGAAAGGTCTGAAGGAGCTCGAGCTATCGAAGATTCCTCCTTCTTCGTTTCCAATTCTTAGCGAGATTGCTGGCCTTAAGTGCTTGACTAAGCTCTCTGTTTGCCATTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTAGATCTCTCATTTAATAAAATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCCTTGATATCCTTGAGAGTTTCCAATAACAAATTGGTGGAATTGCCTCCAGCTCTGTCCTCCCTGCAAAAGTTGGAGAACTTGGACCTATCAAGTAATAGGTTAACATCATTGGGGTCGCTTGAACTTGTATCTATGCATAGCCTTAAAAACTTAAATTTGCAGTACAATAAGTTTCTCAAAAGCTGTCAGATACCCTCCTGGATATGCTGCAATTTTGAAGGAAATTGTGGAGATGATACAGCTAATGAAGAATGGATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCAAGACAATGGGGATAATTTTCCCCATAAAGGTACTCGTAATCTCTCATCAAACCTATTAATGGGACCTTCAACGAATAGTAGATCTTTTGCATCTCGAAGATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAGAAAGCTCGGCAGGAACGTTTGAACAACAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCACGAAAATCATGAACTTGGGAGGCTTGATTCTGCTGCCCCTATTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAAACTTGTCATGGAGGAGCTGAAAGGGAAAACCTTATCAAGAGCCATGAGAATGACAATTTTGATCCCAAAAAGGAATTTTCTGTGGAGGATTGCTCAAGTATCTGTGATGCTGCTGCAGAAACAATGACCAGGGGTATCTGTGATGCTGCTGCAGAAACAATGACAAGGGACAAAAATGAATGTTGTGAGCCTAGTGAGGCTTTGCCGCCAACAGGAAATGAAGCATGTGACCAAGAAGGGTCATCTTCACAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGACAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGCCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAGTATTTCATTTTGCAGTGTTGAGGATCATCTACCTGATGGATTTTACGATGCAGGGCGTGATCGTCCCTTCATGCCATTAAGGAATTATGAGCAAAAGTTCCATCTTGATTCACGCGAAGTCATTCTTGTCAACAGGGAACACGATGAAGTATTAGATTCTATAACAATATCTGCCAAGTCATTGGTGCTCCGTCTAAAGCAGATTAACCACCTAACCCAAGAAAGACATCAAGTTCTTGATGACTTGCATATTGCACAAGTACTTGCTTTATTTGTATCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCAAATTATGAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGGATAATCTTACCGTGCCTACCAAATTGACGGTGGATAATTATGAGGATGTTCTTTTTACTGATATCTGTGAGAGGTCTCTTCGTGCTATTAAAGCTAGTCGAAATTCCATCATAGTTCCTCTAGGAGCTCTGCAGTTTGGTGTGTGTAGGCATAGAGCGGTGCTTCTTAAGTATTTGTGCGACCGCATGGAGCCTCCAGTACCTTGCGAGCTTGTGAGAGGTTACTTAGATTTCTTTCCTCATGCCTGGAACGTGATCAAAGTGAAAAGAGGTAATTCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATAATATACGAGAAGAAGCAGATCCCGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCTAAACTTCCTATTTCTTTTGGAATGGCGCCCAGTCCAGGGTTCTCTTTTCCGTCTCTTTCCAATTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTAGTTAAGTGCAAACTTGGACCAGTTGAGGCTGCAGCGAAGTTACGGACGCGTGAAGTTTGTGAGTCTTCATTTGATGAGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATTCTGGGTGCCTTGAAACACTCCTGCATAGTACAGATGTATGGACATCAGATATGCTCTGAATGGATTCCTTCTGAGGATGGAAAACCAAAGCGTCGGTTACTTAGGTCTGCTATTTTTTTAGAGCATGTTAAAGGGGGATCTTTGAAGAGCTACATGGACAAGTTGTACAAAGCTGGGAAAAAACATGTTCCAATTGATCTGGCATTGCAAGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACATATCATTCATCGAGACATCAAAAGTGAAAATATTTTGATAGATTTTGATGAAAAGTCTGATGGAGTTCCCATCGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGCATTGCTCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACTCCTCGATGGATGGCTCCAGAAGTTCTACGATCAATGCATACACCAAATGTTTATGGACTGGAAGTAGATATATGGTCGTTTGGATGTCTGTTATTCGAACTGTTGACCTTCCAAATTCCGTACTTCGGGCTTACAGAATTGCAGATCTTTGATCAACTTCAGATGGGCAACCGACCAGAATTGACAGGTGAGCTTGAGGAGGCATTGGGGTCGACAGAGGAAAGCTCAATGTCTCAATCTGTTCAAGAATCAGATGGTTTAGAGAAAGACCAAGAAACTACAGCATTCTTGATCGACTTGTTTCGTAAGTGTACACAGGAAAACCCGATTGACCGACCAACAGCTGAAGAACTCCACAGAATTTTGCTCGAGCACACAGCCAAAGTTAAACTAGCTACATGA 3435 41.54 MQLLNSEETVADSSETGLVEARNLKSSKLLASCEDDDGNDADDLVLDVSGRNLDSQFLEGSNSSVKGLYVFRNAFNLIPKSVGDFRELRMLKFFGNEINLFPPELENFVGLECLQVKLSSPGFGGLSLHKLKGLKELELSKIPPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKMKSLPAEIGYLNALISLRVSNNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLKNLNLQYNKFLKSCQIPSWICCNFEGNCGDDTANEEWISSTVEMDVYEATIQDNGDNFPHKGTRNLSSNLLMGPSTNSRSFASRRSGKRWRRRHYLQQKARQERLNNSRKWKGVDHHTEVKIHENHELGRLDSAAPISETTVEDSSVIEDSSVIEELYDSKETCHGGAERENLIKSHENDNFDPKKEFSVEDCSSICDAAAETMTRGICDAAAETMTRDKNECCEPSEALPPTGNEACDQEGSSSQISKDNAKLKRYSDRELDNPKPCKSRKPAEDSSSLSCKYNSISFCSVEDHLPDGFYDAGRDRPFMPLRNYEQKFHLDSREVILVNREHDEVLDSITISAKSLVLRLKQINHLTQERHQVLDDLHIAQVLALFVSDHFGGSDRSAMVEKTRKAVSGSNYEKPFVCTCSTGDRDNLTVPTKLTVDNYEDVLFTDICERSLRAIKASRNSIIVPLGALQFGVCRHRAVLLKYLCDRMEPPVPCELVRGYLDFFPHAWNVIKVKRGNSLVRMVVDACRPNNIREEADPEYFCRYIPLSRAKLPISFGMAPSPGFSFPSLSNCDEIEKAPSSSVVKCKLGPVEAAAKLRTREVCESSFDEIRNFEYSCLGEVRILGALKHSCIVQMYGHQICSEWIPSEDGKPKRRLLRSAIFLEHVKGGSLKSYMDKLYKAGKKHVPIDLALQVARDVASALVELHSKHIIHRDIKSENILIDFDEKSDGVPIVKLCDFDRAVPLRSLLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRSMHTPNVYGLEVDIWSFGCLLFELLTFQIPYFGLTELQIFDQLQMGNRPELTGELEEALGSTEESSMSQSVQESDGLEKDQETTAFLIDLFRKCTQENPIDRPTAEELHRILLEHTAKVKLAT 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65543665 65552047 + Hsped.05g15920.1 Hepe05g1592 570857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 307 344 - -
Hepe05g1592 1144 FunFam Leucine-rich repeat protein kinase family protein 858 1139 - -
Hepe05g1592 1144 Pfam Ethylene-responsive protein kinase Le-CTR1 691 759 - -
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 1074 1100 - -
Hepe05g1592 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 953 965 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1592 1144 SUPERFAMILY L domain-like 59 272 - -
Hepe05g1592 1144 Pfam Protein kinase domain 858 1129 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1592 1144 SUPERFAMILY Protein kinase-like (PK-like) 811 1133 IPR011009 -
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 308 335 - -
Hepe05g1592 1144 PRINTS Leucine-rich repeat signature 182 195 - -
Hepe05g1592 1144 PRINTS Leucine-rich repeat signature 225 238 - -
Hepe05g1592 1144 ProSiteProfiles Protein kinase domain profile. 812 1133 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 504 525 - -
Hepe05g1592 1144 Gene3D Transferase(Phosphotransferase) domain 1 811 1143 - -
Hepe05g1592 1144 SMART LRR_typ_2 225 248 IPR003591 -
Hepe05g1592 1144 SMART LRR_typ_2 179 200 IPR003591 -
Hepe05g1592 1144 SMART LRR_typ_2 202 224 IPR003591 -
Hepe05g1592 1144 SMART LRR_bac_2 202 221 - -
Hepe05g1592 1144 SMART LRR_bac_2 179 198 - -
Hepe05g1592 1144 SMART LRR_bac_2 225 244 - -
Hepe05g1592 1144 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 198 1137 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 475 532 - -
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 1080 1095 - -
Hepe05g1592 1144 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515(InterPro)
Hepe05g1592 1144 SMART serkin_6 812 1134 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1592 1144 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515(InterPro)
Hepe05g1592 1144 Gene3D Ribonuclease Inhibitor 42 287 IPR032675 -
Hepe05g1592 1144 MobiDBLite consensus disorder prediction 489 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1592 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1592 Hepe-Chr5:65543665 Hepe08g2053 Hepe-Chr8:57646493 2.17e-20 dispersed
Hepe05g1592 Hepe-Chr5:65543665 Hepe01g2309 Hepe-Chr1:87687402 2.45e-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72831 PF00069 Pkinase 4.60E-36 CL0016 Hepe PK