Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1603 ATGGAGCCAGGGCTCCGGTCGCCGTCAACTGGCGCCACCCTTCTCGGAAAGTACCGCTTCGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACGAAGCAGTTTCCTTAGCCGACAACTCCACCGTCGCTGTCAAAATCATCGACAAATCCAAAACCGTCGGCGCTACCCTGGAGCGCTGCATAATCCGGGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACGTCCTCAAAATCCACGAAGTCATGGCTACCAAGTCCAAAATCTACCTTGTGGTCGAATTTGCCGCCGGCGGAGAACTCCTCAACAAAATCTCCCGCTGTGGACGGTTCACCGAAACCATCGCCCGCCGGTACTTCCAACAACTCGTCTCCGCCCTCAAATTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTCTTACTGGACGAACAGAGCAATTTGAAAATCTCTGATTTCGGACTCTCTGCTTTACCCGAACAGCTCAAAGACGGTTTGCTCCTCCACACGGCTTGCGGAACTCCAGCTTACTCCGCGCCGGAGGTCATGCTCCGACGAGGCGGCGGTGGATACGACGGCGCAAAGGCCGACGCGTGGTCTTGTGGAGTGATTCTATTCGTATTGCTCTCTGGATTTCTCCCTTTCGACGACAGTAATCTCGCGGCGATGTACAGGAAAATCCACAGGCGAGATTTTAAAATCCCTAATTGGATTTCGAAACCAGCCCGATTCCTAATTCATCACCTCCTCGATCCAAATCCCAATTCCAGGATGAGCATTGAGGCGGTAATGCAAAACCCTTGGTTCAAGAAATCGCTGCAATTGAAGCAGAGTAATGAGAGTCTATTGCAATCGATGAGGGATTATGAATTGCAGAAAGAGAGGGGAATTGGGGAGATGAATGCGTTCGATATAATCTCGATGTCATCGGGGTTGGATTTATCGGGGCTGTTTGAGACGGCGGAGAAGATGGTGGAGAGGAGGTTTACGGCGAGGGAGACGGTGAGGGAGGTGGAGGAAAGGGTGAGGGAGATCGGTGGGGAATTGGGGTATGAGGTGGAGGCGGCGGTGGGAAAAGGCCGAGCAATCGGAATGGGGAAGGGGAGGGTGGTGGTATTGGTGGAAGTGGTGGAGGTGGCGTTGGTGCCGATGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAAAGCTCCATTGGAGGTGTTTGGAAGGATGTTGTTGA 1263 54.32 MEPGLRSPSTGATLLGKYRFGRLLGRGSFAKVYEAVSLADNSTVAVKIIDKSKTVGATLERCIIREVAAMRRLDHHPNVLKIHEVMATKSKIYLVVEFAAGGELLNKISRCGRFTETIARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQSNLKISDFGLSALPEQLKDGLLLHTACGTPAYSAPEVMLRRGGGGYDGAKADAWSCGVILFVLLSGFLPFDDSNLAAMYRKIHRRDFKIPNWISKPARFLIHHLLDPNPNSRMSIEAVMQNPWFKKSLQLKQSNESLLQSMRDYELQKERGIGEMNAFDIISMSSGLDLSGLFETAEKMVERRFTARETVREVEERVREIGGELGYEVEAAVGKGRAIGMGKGRVVVLVEVVEVALVPMTLTMVEVRVVKGGEEFEKLHWRCLEGCC 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 65735092 65738180 + Hsped.05g16030.1 Hepe05g1603 570868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1603 420 SMART serkin_6 18 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1603 420 Pfam Protein kinase domain 18 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1603 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 353 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe05g1603 420 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Hepe05g1603 420 Gene3D Phosphorylase Kinase; domain 1 20 103 - -
Hepe05g1603 420 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Hepe05g1603 420 FunFam Non-specific serine/threonine protein kinase 9 302 - -
Hepe05g1603 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1603 420 ProSiteProfiles Protein kinase domain profile. 18 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1603 420 FunFam Aurora kinase A 11 102 - -
Hepe05g1603 420 Pfam NAF domain 308 362 IPR004041 GO:0007165(InterPro)
Hepe05g1603 420 Gene3D Kinase associated domain 1, KA1 305 419 - -
Hepe05g1603 420 Gene3D Transferase(Phosphotransferase) domain 1 104 304 - -
Hepe05g1603 420 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1603 Hepe-Chr5:65735092 Hepe09g0586 Hepe-Chr9:5510841 1.69e-112 dispersed
Hepe01g0876 Hepe-Chr1:72863903 Hepe05g1603 Hepe-Chr5:65735092 4.15e-44 transposed
Hepe04g0677 Hepe-Chr4:60258929 Hepe05g1603 Hepe-Chr5:65735092 1.06e-06 transposed
Hepe03g0239 Hepe-Chr3:3044734 Hepe05g1603 Hepe-Chr5:65735092 4.11e-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72832 PF00069 Pkinase 5.50E-69 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1603 K12761 - csv:101217555 642.884