Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1625 ATGAAACTTTCTCGTCTAAACTCCCTCCGGCGAGTTCAGTCCGGCGAGTTCATCATGAAGCTCCCCGACGATCAAGATGAATTCAAAAGGCCCCAATTCCCTCTTGATTCCAATTCTTACAAAATCGTCGACGAAATCGGTGTCGGCGTCAGCGCCGTCGTCTACAAAGCCATTTGCATTCCGATGAACTCTGCGGTGGTGGCGATCAAGGCCATCGACCTCGACCGGTCTCGAGCCGATTTCGACGACATCCGACGAGAAGCAAAAATTCTATCACTTCTCTCTCACCCCAACATTCTAAACGCCCACTGTTCTTTCACCGTCGATCGTCAGCTTTGGGTCGTGATGCCGTTCATGTCCGCCGGATCATTACAGTCCATCATTACCTCGTCGTTCCCCGACGGCTTGCCGGAGCCCTGCATCGCCGTCGTTCTCCGCGAAATTCTAAACGCTCTGTCTTACCTCCACGACCAAGGCCACCTCCACCGCGACATCAAAGCTGGCAACATTCTAATGGACTCAAATGGGTCCGTCAAACTCGCCGACTTCGGAGTTTCGGCGTCGATTTTCGAGGCGAATTTAAAACAGGGGATATCAAATTCTCCGATGCTGAAAGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTAATCCACTCGCACAATGGGTACAGTCTAAAAGCCGATATTTGGTCATTTGGAATCACGGCGCTGGAATTAGCCCACGGACGGCCTCCCCTGTCTCATCTCCCTCCTTCCAAATCCCTCCTCCTAAAAATCACACGGCAGTTTCGATTCTCCGATTACGAGAAGACCCAAAACAGCAAGAAACAGAGCAAATTCTCCAAAGGGTTTAAGGAATTGGTCGCGTCCTGCCTCGATCAGGAGCCGTCGAAAAGACCCTGCGCCGAGAAATTGCTCAAACACTCATTCTTCAGGAATTGCAAGGGCCCTGAACTTCTAATGAAAACTATATTACAGGGTTTGCCGAGCGTTGAAGAACGGTTCAAATTGGGGAAATTGCAGAGATTGCCGTCGATGAAAACAGAGGACGAGGAGGAGGAGGAATTGGAGAAGGAGATTGTGAAACAGAGGAGGATCAGTGGGTGGGATTTCAACGAGGATGGGCTAGAATTGGAGGAGTGTTCGATTATAAAACAGGTTCGATTCGGGGGGGAAGCGATGATCGAGGAGGAGGGTGTGGATAGAGAGTGGATAATGGGGGGATTGGTGGCGCTGAAGAGGAGCTTGGAGGAACAGAGGAGGGCGGTGGGGAGTTTGATAGAGGTGATTGAAGGGGAGAAAGGAGGAGAGATTAGCAGAGAAGAGCAGATGGGGAGATTGATGGAGAAGATGAAGAGGGAGTTGGAAATTGAGAGGAAGAGGAACTTTGAATTGGAGATGGAGATGGAATTTCTTAAGATTCAGATTTCTGCTGCTTATAATGGCGGTGGTAGTTCTACCGCCATTGATGACTGA 1482 50.47 MKLSRLNSLRRVQSGEFIMKLPDDQDEFKRPQFPLDSNSYKIVDEIGVGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRQLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEANLKQGISNSPMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRQFRFSDYEKTQNSKKQSKFSKGFKELVASCLDQEPSKRPCAEKLLKHSFFRNCKGPELLMKTILQGLPSVEERFKLGKLQRLPSMKTEDEEEEELEKEIVKQRRISGWDFNEDGLELEECSIIKQVRFGGEAMIEEEGVDREWIMGGLVALKRSLEEQRRAVGSLIEVIEGEKGGEISREEQMGRLMEKMKRELEIERKRNFELEMEMEFLKIQISAAYNGGGSSTAIDD 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 66089647 66091165 + Hsped.05g16250.1 Hepe05g1625 570890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1625 493 Coils Coil 348 368 - -
Hepe05g1625 493 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Hepe05g1625 493 Gene3D Transferase(Phosphotransferase) domain 1 122 366 - -
Hepe05g1625 493 SMART serkin_6 40 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1625 493 SUPERFAMILY Protein kinase-like (PK-like) 27 328 IPR011009 -
Hepe05g1625 493 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Hepe05g1625 493 Pfam Protein kinase domain 40 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1625 493 ProSiteProfiles Protein kinase domain profile. 40 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1625 493 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Hepe05g1625 493 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 388 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Hepe05g1625 493 Coils Coil 450 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1625 K08835 - - csv:101215648 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1625 Hepe-Chr5:66089647 Hepe06g0942 Hepe-Chr6:57015303 8.41e-104 dispersed
Hepe05g1625 Hepe-Chr5:66089647 Hepe02g1817 Hepe-Chr2:27204815 1.13e-109 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1400 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.2e-222 768.5
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT1G53165 52.3 5.8e-67 252.7
Hepe01g1400 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.5 1.6e-229 792.7
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT3G15220 50.8 2.6e-67 253.8
Hepe10g1802 . 4 824 MAP Kinase Kinase Kinase Kinase AT1G69220 59.9 5.0e-243 837.8
Hepe02g1817 . 76 655 MAP Kinase Kinase Kinase Kinase AT5G14720 56.4 1.1e-187 653.7
Hepe02g3102 . 2 525 MAP Kinase Kinase Kinase Kinase AT5G14720 61.9 6.3e-175 611.3
Hepe06g0942 . 6 546 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 3.4e-144 509.2
Hepe05g1625 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.6 1.5e-96 350.9
Hepe06g0942 . 7 550 MAP Kinase Kinase Kinase Kinase AT4G24100 68.7 5.5e-201 698.0
Hepe02g1817 . 81 429 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.2e-132 469.2
Hepe06g0942 . 11 550 MAP Kinase Kinase Kinase Kinase AT4G10730 69.9 9.3e-206 713.8
Hepe02g1817 . 82 450 MAP Kinase Kinase Kinase Kinase AT4G10730 63.7 3.9e-135 479.2
Hepe02g1817 . 76 447 MAP Kinase Kinase Kinase Kinase AT1G70430 65.2 2.9e-139 492.7
Hepe02g1286 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.6 2.2e-134 476.5
Hepe06g0942 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.1 1.7e-118 423.7
Hepe02g1286 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 3.9e-217 751.5
Hepe02g1817 . 81 428 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 7.2e-147 518.1
Hepe02g1817 . 76 402 MAP Kinase Kinase Kinase Kinase AT1G23700 57.0 2.6e-98 356.3
Hepe02g1286 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 1.8e-86 317.0
Hepe06g0942 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.4e-75 278.9
Hepe02g3102 . 2 172 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 3.0e-49 193.4
Hepe05g1625 . 32 458 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 2.5e-136 482.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72834 PF00069 Pkinase 1.40E-59 CL0016 Hepe PK