Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1646 ATGGATCCATTAGAGGACCCAAGTTGTTGGGATTTTCTCGATTATTCCTTGTTCGTCGACGACGACGACAGTATCGCTAACCCTTCGCTCCCTCCTTTCTGGCCGTCTAATGATTCCAGGGATAGTGGTGGGGAAACTGATGTTTCACCCGGCCGTGTTGAATCTGAAGAAAATGATTGTTCGCGGAAGAGGACACGAGATGGATCGTGCGCTGGACCGACTTCGAAAGCTTGTCGTGAGAGGTTGCGGAGAGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTGATAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTAAAGACTGAAGCTGAGGAGCTCAAACAAACGAATGAAAAGCTACGAGAAGAAGTGGAGTGTTTAAAGGCCGAGAAGAATGATCTTCGGAAAGAGAAAATCGTTTTGAAGGAAGACAGGGAAAGAATCGAGCAACAGTTGAAATCTATAGCCATTCCACCTCCTGGGCAGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTGCTCAAAGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGTGATACAACTCAAGATCATGAGCTCAGGCCCCCTGCTGCCTAG 687 45.85 MDPLEDPSCWDFLDYSLFVDDDDSIANPSLPPFWPSNDSRDSGGETDVSPGRVESEENDCSRKRTRDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPDRPTKTNKPAILDDAIRVLNQLKTEAEELKQTNEKLREEVECLKAEKNDLRKEKIVLKEDRERIEQQLKSIAIPPPGQLIPGHPAAYHAAAQSKMAVFPGYGLIPMWQYLPPSVRDTTQDHELRPPAA 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 66308257 66311867 - Hsped.05g16460.1 Hepe05g1646 570911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1646 228 PANTHER BHLH TRANSCRIPTION FACTOR 39 228 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Hepe05g1646 228 MobiDBLite consensus disorder prediction 45 66 - -
Hepe05g1646 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 122 IPR011598 GO:0046983(InterPro)
Hepe05g1646 228 Gene3D - 74 155 IPR036638 GO:0046983(InterPro)
Hepe05g1646 228 CDD bHLH_AtILR3_like 76 151 - -
Hepe05g1646 228 MobiDBLite consensus disorder prediction 26 75 - -
Hepe05g1646 228 Coils Coil 112 167 - -
Hepe05g1646 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983(InterPro)
Hepe05g1646 228 Pfam Helix-loop-helix DNA-binding domain 75 123 IPR011598 GO:0046983(InterPro)
Hepe05g1646 228 SMART finulus 77 128 IPR011598 GO:0046983(InterPro)
Hepe05g1646 228 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1646 Hepe-Chr5:66308257 Hepe08g0487 Hepe-Chr8:4274991 1.98e-28 dispersed
Hepe05g1646 Hepe-Chr5:66308257 Hepe01g1311 Hepe-Chr1:78330567 3.14e-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55664 PF00010 HLH 2.00E-07 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1646 - - - 0.0