Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1651 ATGGATTACTCTGGTTTCTTCTCATCGGCGTCTGATTTCTCATCGGAATCATCGTTCGGTTCACCGGAATCGTCGTTCATGAATTGGGATCAAAATTTTCTTCCTTTCGATGAGAATGACTCGGAGGAAATGCTTCTGTACGGGATGATTTCGGAGAGTGGTATTGGGTCGATGCGAGTCAAGGAAGAGGAGGTCGATTCGGTCGGAGAAGAAAGCCCGAAGAAGGACAGAGCTTACAGGGGAGTTCGCCGGCGACCATGGGGGAAATTCGCGGCGGAAATTAGAGATTCCACAAGACATGGTATAAGGGTTTGGTTGGGGACTTTTGATAGTGCCGAAGCTGCCGCTTTAGCTTACGATCAAGCTGCCTTTTCGATGAGAGGTGCCGCCGCAATTCTCAATTTTCCCGTCGATAGAGTTCGGGAGTCTCTCAAAGAAATGAACTGCGGCGGCGGCGACGGCGACCGATTGGCCGATGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACATTCGATTAGAAGGAAAGCAATAAGCAAAAAGAGCAAAGACAGAGATGTGAGGATTCAAAATGTGGTGGTTTTGGAAGATTTAGGAACAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGCAGCCCGTCATCTTTCTAG 660 48.79 MDYSGFFSSASDFSSESSFGSPESSFMNWDQNFLPFDENDSEEMLLYGMISESGIGSMRVKEEEVDSVGEESPKKDRAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCGGGDGDRLADDGGSPVVALKRKHSIRRKAISKKSKDRDVRIQNVVVLEDLGTEYLEELLGSSQSGSPSSF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 66377485 66378599 + Hsped.05g16510.1 Hepe05g1651 570916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1651 219 CDD AP2 79 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 SMART rav1_2 78 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 FunFam Ethylene-responsive transcription factor 2 77 138 - -
Hepe05g1651 219 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 PANTHER DNA-BINDING DOMAIN 39 177 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Hepe05g1651 219 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677(InterPro)
Hepe05g1651 219 Pfam AP2 domain 79 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g1651 219 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0275 Hepe-Chr3:3625519 Hepe05g1651 Hepe-Chr5:66377485 9.04e-73 dispersed
Hepe05g1651 Hepe-Chr5:66377485 Hepe06g1929 Hepe-Chr6:70505610 1.54e-49 dispersed
Hepe05g1650 Hepe-Chr5:66352616 Hepe05g1651 Hepe-Chr5:66377485 3.37e-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55667 PF00847 AP2 2.50E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1651 K14516 - csv:101210326 304.293