Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1661 ATGCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCATCTTCAGGCTAAATATGTGGGAACTGGGCATGCCGACTTAAATAGATTTGAATGGGCCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCCTTCTTGCTTACTTTGGTATAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAATTTTATGCAGGTGGATATCAAATGGGATAGGGAAGCCCAATCCCTAATTTGCACTTCATTTAAGTTCCTTCTCATATGTGAGATTCCAAGATTCAGAATTTGGATTCCACAATTCAGCAATAGTAGCCTCCTTTTTAAGTATTCTTTGGCTCATCAGTTCTCTGGTGTTATTCTACAAAATGGAAAGCAGGTTCAAGTGAAGGGACATGTGGGTCCAGCATTGGTCCGTGCCAATTGGTTTCAACGTTTTACTTGTCCCTTCGCTAACGAAAGCTACGGTTCATGCTCAGGAAAATGCAAGCACACATGCTCTCAGTCTGACAAAGGGAATGTATATTCTGAGCTTTTGGCTACGGAAGGTGTTCGTGGCTTGAATGGCATTTGCGATCGTTACCATCGGGCTGGGAGGTGTGGATCAGAGGCAGTATTTGATGATTTGAATCCTCTTCAGAATCGACGCGGCACCGGGATTGCGAACGGGGAAGCATTTTTGTGCCATTTTGTCATGGAGCATATTATAGGTGGGAAGTTTAAGCTTGGGAGGAAGATCGGCAGCGGATCATTTGGCGAACTTTATTTGGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGCTAAGACCAAGCACCCTCAGCTTCACTATGAGTCGAAATTATACATGCTTCTTCAAGGAGGAACCGGTGTCCCCCATCTCAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCCTAGAGGACTTGTTCAACTACTGCAATCGGAAACTGACCTTGAAGTCAGTTTTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAATATATGCATTCACGGGGCTTCCTTCATCGTGACATAAAGCCGGACAATTTTCTAATGGGCTTGGGGAGAAAGGCTAATCAAGTGTACATCATTGACTATGGTCTTGCAAAAAAGTACAGAGATCTTCAGACACACAAGCATATACCATACAGAGAAAATAAGAATCTCACAGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTCGGAGTTGAGCAAAGCAGGAGGGACGATTTAGAATCACTGGGCTACGTTCTAATGTATTTTCTTAGGGGAAGCCTTCCTTGGCAAGGACTGAAGGCAGGAACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAGAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAGTCATATCCATCAGAATTTACATCCTACTTCCACTATTGTCGATCACTGAGGTTTGAAGATAAACCTGACTATTCATATCTGAAAAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTCGACTATGTATTTGACTGGACTATACTGAAATATCCACAGATTGGCTCCAGTTCAAAACCACGACCCAGTGGAAAACCAGGTCTCTCCCCAGGACCATCTGCTGAAAGAGGGGAAAAGCATCCAGTGGGCCAAGATACCAGAGATAGATTCTCTGGGGGAGCTGAGGCATTCGGAAGAAGGAACGCTAGTGGGCATGGTTTGCACGGCGATCATTCCAGACACAGATCATCTGATGATGTACCATCTTCCAAGGATGTGCAACCTGATTCAGAAAGGGGCCGCAGTAGTTATAGGAATGGAAGCATTTCAAAGAGGCCTGTTTTATCGAGCAGTCGACCAAGCTCCTCTGGGGAGCCAAGTGAAATCCGATCAAGTCGGCTGGTGTCAACAAGTAGTCGCCTATCTGCAGGTCAAAGGGTTCAACCTGGTTTCGAGTCCAAAACAACAAATTTCACCCGTTCTGCAACTACAAAAGGCGGTCGTGATGATACACTCCGGAGCTTTGAGCTGTTGTCTATTGGAACTGGCAAGAGGAAATAA 2103 44.41 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFGIAENESIGRERYNFMQVDIKWDREAQSLICTSFKFLLICEIPRFRIWIPQFSNSSLLFKYSLAHQFSGVILQNGKQVQVKGHVGPALVRANWFQRFTCPFANESYGSCSGKCKHTCSQSDKGNVYSELLATEGVRGLNGICDRYHRAGRCGSEAVFDDLNPLQNRRGTGIANGEAFLCHFVMEHIIGGKFKLGRKIGSGSFGELYLGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGLSPGPSAERGEKHPVGQDTRDRFSGGAEAFGRRNASGHGLHGDHSRHRSSDDVPSSKDVQPDSERGRSSYRNGSISKRPVLSSSRPSSSGEPSEIRSSRLVSTSSRLSAGQRVQPGFESKTTNFTRSATTKGGRDDTLRSFELLSIGTGKRK 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 66499909 66513860 + Hsped.05g16610.1 Hepe05g1661 570926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1661 700 MobiDBLite consensus disorder prediction 614 679 - -
Hepe05g1661 700 Pfam Protein kinase domain 247 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1661 700 MobiDBLite consensus disorder prediction 585 613 - -
Hepe05g1661 700 Pfam Splicing factor 3B subunit 10 (SF3b10) 5 72 IPR009846 -
Hepe05g1661 700 MobiDBLite consensus disorder prediction 536 685 - -
Hepe05g1661 700 ProSitePatterns Protein kinases ATP-binding region signature. 252 275 IPR017441 GO:0005524(InterPro)
Hepe05g1661 700 Gene3D Transferase(Phosphotransferase) domain 1 219 552 - -
Hepe05g1661 700 ProSiteProfiles Protein kinase domain profile. 246 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1661 700 FunFam Putative Casein kinase I 238 322 - -
Hepe05g1661 700 FunFam Casein kinase 1-like protein 238 566 - -
Hepe05g1661 700 PANTHER CASEIN KINASE-RELATED 245 592 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Hepe05g1661 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1661 700 SMART serkin_6 246 665 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1661 700 SUPERFAMILY Protein kinase-like (PK-like) 241 527 IPR011009 -
Hepe05g1661 700 CDD STKc_CK1_delta_epsilon 245 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1661 K08960 - - csv:101207063 853.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1661 Hepe-Chr5:66499909 Hepe08g2607 Hepe-Chr8:67934332 8.09e-168 dispersed
Hepe04g1940 Hepe-Chr4:74316042 Hepe05g1661 Hepe-Chr5:66499909 1.04e-42 transposed
Hepe08g2671 Hepe-Chr8:68742814 Hepe05g1661 Hepe-Chr5:66499909 6.51e-185 transposed
Hepe03g0291 Hepe-Chr3:3893183 Hepe05g1661 Hepe-Chr5:66499909 9.03e-258 wgd
Hepe05g1661 Hepe-Chr5:66499909 Hepe06g1914 Hepe-Chr6:70276929 5.57e-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g723 . . . . . . . . . . . . Car06g01135 . . Cpe08g00337 Cpe03g01519 Bhi01g00722 . . . Hepe05g1661 . . . . . . . . . . . Cone7ag0328 Cone4ag0332 Lsi05g01737 . . Cme06g00484 . . . . . . . . . Cmo06g01327 . . . . . . . . . . . . . . Cla05g00440 Cam05g0478 Cec05g0488 Cco05g0488 . Cmu05g0453 Cre05g0515 . Csa03g01202 Chy06g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72836 PF00069 Pkinase 1.60E-25 CL0016 Hepe PK