Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1675 ATGAGAGCAAAGGCCTGGATTAACGAGAAAAAAATTGGCCTCAAGAGTAAATTTAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGAACTGGCGAGGTGGAATCAAAGGTGGATAATGGCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTATCAAAAGGGTAACATTGAAGCTGCCCTTCATGTCTTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATCAAAGCTTCCATTCCAACGAGAAATGAACAAAATAGACGCCAATCACAAAGTGATGTCGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTAAAAGCAAAATCATTGCAGGGTTTAGGAAGGTTTGTAGAGTCAGCCAAATCATGCAAACTAATTTTAGACACTGTTCAATCTGCATTACCAGAAGGCTTGCCTGAAAACTTTGCTATTGATTGTAAATTGCAAGAGACGCTAGCGAAGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCCGCCGGGTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCTCTTCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCACAGATGGAAAGTTCATTTGTACCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATATAAACATGGATTGATTGTATGGGACCCATCAATAATAGACCATCTCTCGTTTGCATTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTTATGAGGTTGAACAATTGCCTCCAGGAATTATAGGAAGAAAAGAAAAGTACTGCACCCTAGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTAATTGCGTTGAATCTTTTGAAGAATTTCTTAAGTAACATAGAGAATGTTGACTGCCTACTGGAATTGTTGTTGGCGTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGACGATGGGGTGACATACACATCGAGAGCACTTTCGGAACTGCATGGTAAATGCATCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTAATGTCAGCTATATCCAAATCAGTTGCTTCTGATTCTCAGAAGACTTTGAAGCAATCTGTAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATATTGCACTATACTATGCAAAACAGTTAGTGAAACTCGAGGCCGGCTCTAGTTTGAAGTCATACCTCCTGTTGGCCAGAATATTGTCTGCCCAGAAACGGTTTGCGGATGCGGAGACTGTACTCAATGCTGCTCTTGAGCAGACTGGGAAGTGGGAACAAGGGGAACTCTTACGGACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAGTGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAGTCCAGACCAAAAGTAGTGGGGTTGGAAAGATGCTTTCAAAGGATGTGAGAAAATCTGACAGAAGTCTGGAAATAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTATCAAAATTGCAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTACTCTACGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCTTGTCTTCTCCAAAAGCTAGGCGGCACTCAGTCATTTCCTGTGGCAAGAAGCTTGTTAACTGACGCCCTCCGACTAGATCGAGCAAATCCATCTGCGTGGTACAATCTCGGGCTGCTATATAAAGCAGACGTTGGGGCATCGGCGCTGGAGGTTGCTGAATGCTTTGAGGCTGCAACTCTGCTGGAAGAATCAGCACCAGTTGAACCTTTCAGATGA 2199 42.06 MRAKAWINEKKIGLKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVESKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASIPTRNEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVESAKSCKLILDTVQSALPEGLPENFAIDCKLQETLAKAVELLPELWKSAGSPEESILSYRRALLYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKYKHGLIVWDPSIIDHLSFALSISGEFGALAYEVEQLPPGIIGRKEKYCTLALCYYGEGKSLIALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDDGVTYTSRALSELHGKCIQMASVANCLLGVLMSAISKSVASDSQKTLKQSVALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVKLEAGSSLKSYLLLARILSAQKRFADAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKSGIETYSHLLAIIQVQTKSSGVGKMLSKDVRKSDRSLEIDTWHDLANIYTSLSQWRDAEICLSKLQAINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQKLGGTQSFPVARSLLTDALRLDRANPSAWYNLGLLYKADVGASALEVAECFEAATLLEESAPVEPFR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 66675980 66681944 + Hsped.05g16750.1 Hepe05g1675 570940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1675 732 Pfam Tetratricopeptide repeat 627 652 IPR019734 GO:0005515(InterPro)
Hepe05g1675 732 SMART tpr_5 620 653 IPR019734 GO:0005515(InterPro)
Hepe05g1675 732 SMART tpr_5 586 619 IPR019734 GO:0005515(InterPro)
Hepe05g1675 732 SMART tpr_5 494 527 IPR019734 GO:0005515(InterPro)
Hepe05g1675 732 SUPERFAMILY TPR-like 458 558 IPR011990 GO:0005515(InterPro)
Hepe05g1675 732 Gene3D Tetratricopeptide repeat domain 570 726 IPR011990 GO:0005515(InterPro)
Hepe05g1675 732 PANTHER PROTEIN NPG1 12 732 IPR043376 -
Hepe05g1675 732 Pfam Tetratricopeptide repeat 468 523 - -
Hepe05g1675 732 Gene3D Tetratricopeptide repeat domain 58 567 IPR011990 GO:0005515(InterPro)
Hepe05g1675 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515(InterPro)
Hepe05g1675 732 ProSiteProfiles Leucine-rich repeat profile. 353 374 IPR001611 GO:0005515(InterPro)
Hepe05g1675 732 SUPERFAMILY TPR-like 530 703 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1526 Hepe-Chr1:80489946 Hepe05g1675 Hepe-Chr5:66675980 1.10e-195 dispersed
Hepe08g1336 Hepe-Chr8:15327637 Hepe05g1675 Hepe-Chr5:66675980 4.23e-185 transposed
Hepe05g1675 Hepe-Chr5:66675980 Hepe06g1909 Hepe-Chr6:70244692 1.27e-298 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1675 K21843 - csv:101206105 1296.95