Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1708 ATGGATTCTGGGTTTTGCGCCGCCCATCTCTCCGATCTCTTCGGCCCCAACACCACCAACGCCACCGGCGCTGCAACTTTCATCTGCGACCAACTCACCACCATCTCCAACAACTTCTCCGATACCAGAAATGCTCTCGACAACACCTACCTCCTCTTCTCCGCCTATCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCTGCCGGCGGTCTCTTCTACTACCTCTTCGGCTACGCCTTCGCCTTTGGATCCCCCTCCAACGCCTTCATCGGCCGCCATAACTTTGGTCTCACTTCTTTCCCGACCTCCACTGCCGATTACAGCGTCTTCATCTATCAGTGGGCGTTTGCAATTGCCGCCGCCGGGATTACGAGTGGATCTATTGCAGAGCGGACTCAATTTGTTGCCTATTTGATTTACTCCTCTGTTTTGACTGGTTTTGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCACCGGATGGTTGGGCTAGTGTTATGAAATCAGATGGCGGGTTGTTGTTTGGATCTGGAGTTATTGATTTTGCCGGCTCCGGTGTCGTCCATATGGTTGGGGGAATTGCAGGTTTATGGGGTGCGGTGATCGAGGGACCGAGAATCGGTCGATTCGATCAATCCGGCCGATCCGTGGCTCTGCGAGGGCATAGCGCCACTTTAGTCGTACTCGGAACATTTATGCTCTGGTTTGGATGGTATGGGTTCAATCCAGGTTCGTTTACGAAGATTCTCGTCCCGTACACGACCGGAAACTTCTACGGTCAGTGGAGTGCCGTCGGACGGACAGCGGTCACCACCACACTCGCCGGATGCACAGCGGCGCTCACCACACTCTTCGGGAAAAGATTCCTCTCCGGTCATTGGAACGTGATGGACGTTTGTAACGGACTCCTCGGCGGCTTCGCCGCCATCACCGCAGGCTGCTCCGTCGTCGAGCCGTGGGCTGCAATCATCTGTGGCTTCGTCGCCGCGCTCGTGCTAATAACCTGCAACCGTATCGCCGAGAAGGTGAAGTACGACGATCCGTTGGAAGCGGCGCAACTCCACGGTGGCTGCGGCGCGTGGGGAGTGATATTCACGGCACTCTTCGCGACGAAGGAATACGTTGCAGAAGTGTACGGCGGATCGAACCGGCCGTATGGATTGTTTATGGGCGGTGGCGGTAGGTTACTGGCGGCGCATTTGATACAGATTCTGGTGATTGTAGGGTGGGTGAGTGCAACGATGGGGCCATTGTTCTTTGTTTTGCACAAACTGAAGCTTTTGAGAATCTCTGCTGAAGATGAAATGGCGGGGATGGATATGACCCGCCATGGCGGATTTGCTTACATATATCACGATGAAGATGAAAAGAAGAAATCGGGGATTCAGATGAGCAGAGTGGAACCGGGATCTGCAACTCCGAGCGGAGATTATTGA 1503 54.49 MDSGFCAAHLSDLFGPNTTNATGAATFICDQLTTISNNFSDTRNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNAFIGRHNFGLTSFPTSTADYSVFIYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASVMKSDGGLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDQSGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVMDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKVKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVAEVYGGSNRPYGLFMGGGGRLLAAHLIQILVIVGWVSATMGPLFFVLHKLKLLRISAEDEMAGMDMTRHGGFAYIYHDEDEKKKSGIQMSRVEPGSATPSGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67348384 67349886 + Hsped.05g17080.1 Hepe05g1708 570973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1708 500 FunFam Ammonium transporter 28 486 - -
Hepe05g1708 500 PANTHER AMMONIUM TRANSPORTER 25 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Hepe05g1708 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe05g1708 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Hepe05g1708 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe05g1708 500 SUPERFAMILY Ammonium transporter 44 452 - -
Hepe05g1708 500 MobiDBLite consensus disorder prediction 479 500 - -
Hepe05g1708 500 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0333 Hepe-Chr3:4540992 Hepe05g1708 Hepe-Chr5:67348384 1.75e-297 dispersed
Hepe05g1708 Hepe-Chr5:67348384 Hepe08g1959 Hepe-Chr8:53532006 1.17e-246 dispersed
Hepe05g1708 Hepe-Chr5:67348384 Hepe06g1884 Hepe-Chr6:70050425 1.61e-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1708 K03320 - csv:101208366 911.753