Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1732 ATGGCAATGGCGGAATCTGGAGGATTGATTCGGCTGTTTCTTCTCGTGGTATTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTTCCGAAATTGAGAATAAGGTAACTGAGATGTTGCAGAGCTCAAGAAATTCATCAATGGCAGTGAGGTTGGATGAGGTAGAGGCTCTCGGTAATAAGCATGCCGTTGACAACCCTGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGATTCTTCTCTTGTGGAACCGGCAATCCCATCGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGCGGTATTGGCTTTGGCCGGAACGCCATAGGTGGTCGCGACGGTCGATTCTACGTCATCACTGATTCCGGCGACGACGACCCTATCAACCCAAGGCCCGGCACTTTGCGCCACGCCGTCATCCAAGACGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTTATACAACTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTTTAAACATCCATGACTGCAGGCCCACTGGAAACGCCATGGTAAGAAGCTCACCAAATCACGTTGGGTGGAGAACAATTGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAATTGTGCTGATGGTCTTGTTGATGCTGTCATGGGATCCACTGCACTTACCATTACAAACAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGGCATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCATTGGGAAATGTATGCCATTGGTGGAAGTGCAAATCCAACCATCAACAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAATCTCAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACCTATTATTGAATGGTGCCTTCTTCATTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCTTCATCCATGGTTGGTTCCATAACAATGAATGCCGGTGCACTTTCCTGCCGGAGAGGCCATGCCTGCTAG 1344 46.88 MAMAESGGLIRLFLLVVFMLFVGTIARVPKEISEIENKVTEMLQSSRNSSMAVRLDEVEALGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVITDSGDDDPINPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCRPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTALTITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKSSSMVGSITMNAGALSCRRGHAC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67554278 67559911 - Hsped.05g17320.1 Hepe05g1732 570997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Hepe05g1732 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Hepe05g1732 447 FunFam Pectate lyase 98 440 - -
Hepe05g1732 447 SUPERFAMILY Pectin lyase-like 75 441 IPR011050 -
Hepe05g1732 447 PANTHER PECTATE LYASE 18-RELATED 22 444 IPR045032 GO:0030570(InterPro)
Hepe05g1732 447 Pfam Pectate lyase 184 362 IPR002022 -
Hepe05g1732 447 SMART amb_all 173 370 IPR002022 -
Hepe05g1732 447 Gene3D - 98 440 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1056 Hepe-Chr1:75259090 Hepe05g1732 Hepe-Chr5:67554278 4.95e-191 dispersed
Hepe02g2922 Hepe-Chr2:78289569 Hepe05g1732 Hepe-Chr5:67554278 4.37e-183 dispersed
Hepe04g0960 Hepe-Chr4:63987509 Hepe05g1732 Hepe-Chr5:67554278 1.10e-188 dispersed
Hepe05g1732 Hepe-Chr5:67554278 Hepe10g0060 Hepe-Chr10:582201 2.56e-218 dispersed
Hepe07g2538 Hepe-Chr7:69842734 Hepe05g1732 Hepe-Chr5:67554278 3.54e-91 transposed
Hepe03g0340 Hepe-Chr3:4785313 Hepe05g1732 Hepe-Chr5:67554278 4.66e-275 wgd
Hepe05g1732 Hepe-Chr5:67554278 Hepe06g1869 Hepe-Chr6:69767915 6.86e-260 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1732 K01728 - csv:101218188 853.973