Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1757 ATGCCTCCAAATTTCTCCGGCCACCACCATCTCTACAACAACCAAGACCAATTCATGAGGTCTCGTCCCCTGGAAGAAACCTCCGCCGACAACTCCGCCGCCGGAATCCTCTCCTACTTTCCGGCCAACACTCCGCCGCCGCTGCAGCCGATAACTTCTCTTGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTCGGCCCGAAGCTCAGCCTCAACCGGTTCGACGAGCAGGACGAACCGGCATCCGGGATCGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTAAACAACGAGAGGGCGGCGGCAGATGAGGAGGAGGAGGCGGCGGAGATGGGGAGAATTGTAGGGGAATTAGAAGAGGAGGAGAATTTTATGAATAATAATAATAATAATTATAATAAAAATAATAAAGGTAATAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGAAGATCGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGAATGACGCATATTGCTGTGGAGAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTTTGCGTTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGACCAAGCATCCATAATCGGCGGAGCAATCGAGTTTGTGAGAGAGCTGGAGCAGCTCCTCCAGTGTCTAGAATCACAAAAACGACGTCGTCTCGTAGGAGAATCGCCACTGCAGGCCGCAGACCCCCCGCCGCCGCCGTCGCAGCAGCAGCAGCAGCAGCAACCGCCATTTGGTGGTGATCAAAACGACGGGCAAATGTTCGAAACGACAGCGGAGAGCAAATCGTGCGTAGCTGACGTGGAAGTGAAGGTTTTGGGATTGGACGCAATGATAAAAATACTTTCTAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCACTTGAAGATCTGCAACTCAATATTCTTCATACCAATATCACCACCATTGAACAGACCGTTCTTTATTCCTTCAACGTCAAGGTAGCAAGCGAGTCAAGATTCAAAGCAGAAGATATAGCGAGCTCAGTTCAGCAGATATTCAGTTTTATTCATGCGAACACCGGGATGTGA 1101 48.86 MPPNFSGHHHLYNNQDQFMRSRPLEETSADNSAAGILSYFPANTPPPLQPITSLDKLSFAEVMQFADFGPKLSLNRFDEQDEPASGIDPVYFLKFPVLNNERAAADEEEEAAEMGRIVGELEEEENFMNNNNNNYNKNNKGNNNNNNNNNNKRKRGRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLVGESPLQAADPPPPPSQQQQQQQPPFGGDQNDGQMFETTAESKSCVADVEVKVLGLDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKVASESRFKAEDIASSVQQIFSFIHANTGM 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67888506 67891825 + Hsped.05g17570.1 Hepe05g1757 571022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1757 366 PANTHER TRANSCRIPTION FACTOR FAMA 88 359 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Hepe05g1757 366 FunFam Basic helix-loop-helix transcription factor 158 233 - -
Hepe05g1757 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 238 IPR036638 GO:0046983(InterPro)
Hepe05g1757 366 MobiDBLite consensus disorder prediction 156 170 - -
Hepe05g1757 366 Coils Coil 104 138 - -
Hepe05g1757 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 218 IPR011598 GO:0046983(InterPro)
Hepe05g1757 366 Gene3D - 144 233 IPR036638 GO:0046983(InterPro)
Hepe05g1757 366 MobiDBLite consensus disorder prediction 237 268 - -
Hepe05g1757 366 ProSiteProfiles ACT domain profile. 292 366 IPR002912 -
Hepe05g1757 366 SMART finulus 173 224 IPR011598 GO:0046983(InterPro)
Hepe05g1757 366 MobiDBLite consensus disorder prediction 128 170 - -
Hepe05g1757 366 MobiDBLite consensus disorder prediction 254 268 - -
Hepe05g1757 366 CDD bHLH_AtFAMA_like 170 238 - -
Hepe05g1757 366 MobiDBLite consensus disorder prediction 128 152 - -
Hepe05g1757 366 Pfam Helix-loop-helix DNA-binding domain 168 219 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1757 Hepe-Chr5:67888506 Hepe06g1020 Hepe-Chr6:58162673 7.07e-13 dispersed
Hepe05g2107 Hepe-Chr5:71655365 Hepe05g1757 Hepe-Chr5:67888506 3.12e-48 transposed
Hepe06g1782 Hepe-Chr6:68896549 Hepe05g1757 Hepe-Chr5:67888506 3.36e-38 transposed
Hepe07g0089 Hepe-Chr7:833341 Hepe05g1757 Hepe-Chr5:67888506 5.42e-35 transposed
Hepe08g2352 Hepe-Chr8:63733114 Hepe05g1757 Hepe-Chr5:67888506 4.09e-39 transposed
Hepe10g0469 Hepe-Chr10:5422246 Hepe05g1757 Hepe-Chr5:67888506 3.48e-41 transposed
Hepe03g0396 Hepe-Chr3:5680979 Hepe05g1757 Hepe-Chr5:67888506 3.37e-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55674 PF00010 HLH 7.40E-10 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1757 K26213 - csv:101214530 487.648