Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1761 ATGCTCTCTGGGTTTTCACAGGAATCGGCCGGAATATACTCGGGCATTCCGGCGCTGCCGATGGACGGCGGCAAGTTTCAGGGTACTCTCGACGGGACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCAAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAGCGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGCGTTAAAGGTCTCACTCTTTATCACTTAAAATCACATCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACGAGTTCTTCTTCATCGCCATCGTCGAGAATAATGACACAAGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGCCATCTTCAACTTCGAATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGTGCTTGTCAAGCATTGAGCGATCAGGCTGCAGCGTCTGCGGGGCTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAATGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAACCGAAAGGCTCCTAATGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCTTGACATCAGCTGGAAGCCCGATTTCCCCGATCGGAGTAGGGTCGACTATCACCACGATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGTTCTCGAGGGCAATGCTCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 942 50.53 MLSGFSQESAGIYSGIPALPMDGGKFQGTLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKMLPFSELAAALENRKAPNVMARIGDCSMDSCLTSAGSPISPIGVGSTITTMKRPRPVFSHGDSMVLEGNARHDVEWMMSNIG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67921590 67926598 + Hsped.05g17610.1 Hepe05g1761 571026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1761 313 SUPERFAMILY Homeodomain-like 48 105 IPR009057 -
Hepe05g1761 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 269 IPR046955 GO:0003700(InterPro)
Hepe05g1761 313 MobiDBLite consensus disorder prediction 112 137 - -
Hepe05g1761 313 Coils Coil 203 223 - -
Hepe05g1761 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Hepe05g1761 313 FunFam Myb family transcription factor 47 105 - -
Hepe05g1761 313 Pfam MYB-CC type transfactor, LHEQLE motif 146 191 IPR025756 -
Hepe05g1761 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677(InterPro)
Hepe05g1761 313 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Hepe05g1761 313 MobiDBLite consensus disorder prediction 111 137 - -
Hepe05g1761 313 Gene3D - 47 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0007 Hepe-Chr2:242462 Hepe05g1761 Hepe-Chr5:67921590 2.70e-47 dispersed
Hepe04g1685 Hepe-Chr4:72019637 Hepe05g1761 Hepe-Chr5:67921590 1.01e-54 dispersed
Hepe05g0976 Hepe-Chr5:43532164 Hepe05g1761 Hepe-Chr5:67921590 8.94e-41 dispersed
Hepe05g1761 Hepe-Chr5:67921590 Hepe06g1815 Hepe-Chr6:69246317 2.51e-36 dispersed
Hepe05g1761 Hepe-Chr5:67921590 Hepe08g0654 Hepe-Chr8:5829050 3.29e-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55675 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1761 - - - 0.0