Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1761 ATGCTCTCTGGGTTTTCACAGGAATCGGCCGGAATATACTCGGGCATTCCGGCGCTGCCGATGGACGGCGGCAAGTTTCAGGGTACTCTCGACGGGACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCAAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAGCGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGCGTTAAAGGTCTCACTCTTTATCACTTAAAATCACATCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACGAGTTCTTCTTCATCGCCATCGTCGAGAATAATGACACAAGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGCCATCTTCAACTTCGAATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGTGCTTGTCAAGCATTGAGCGATCAGGCTGCAGCGTCTGCGGGGCTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGACTCAAAAAATGCTTCCCTTTTCAGAACTTGCTGCTGCTTTAGAAAACCGAAAGGCTCCTAATGTTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCTTGACATCAGCTGGAAGCCCGATTTCCCCGATCGGAGTAGGGTCGACTATCACCACGATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGTTCTCGAGGGCAATGCTCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 942 50.53 MLSGFSQESAGIYSGIPALPMDGGKFQGTLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKMLPFSELAAALENRKAPNVMARIGDCSMDSCLTSAGSPISPIGVGSTITTMKRPRPVFSHGDSMVLEGNARHDVEWMMSNIG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67921590 67926598 + Hsped.05g17610.1 Hepe05g1761 571026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1761 313 SUPERFAMILY Homeodomain-like 48 105 IPR009057 -
Hepe05g1761 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 269 IPR046955 GO:0003700(InterPro)
Hepe05g1761 313 MobiDBLite consensus disorder prediction 112 137 - -
Hepe05g1761 313 Coils Coil 203 223 - -
Hepe05g1761 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Hepe05g1761 313 FunFam Myb family transcription factor 47 105 - -
Hepe05g1761 313 Pfam MYB-CC type transfactor, LHEQLE motif 146 191 IPR025756 -
Hepe05g1761 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677(InterPro)
Hepe05g1761 313 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Hepe05g1761 313 MobiDBLite consensus disorder prediction 111 137 - -
Hepe05g1761 313 Gene3D - 47 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1761 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0007 Hepe-Chr2:242462 Hepe05g1761 Hepe-Chr5:67921590 2.70e-47 dispersed
Hepe04g1685 Hepe-Chr4:72019637 Hepe05g1761 Hepe-Chr5:67921590 1.01e-54 dispersed
Hepe05g0976 Hepe-Chr5:43532164 Hepe05g1761 Hepe-Chr5:67921590 8.94e-41 dispersed
Hepe05g1761 Hepe-Chr5:67921590 Hepe06g1815 Hepe-Chr6:69246317 2.51e-36 dispersed
Hepe05g1761 Hepe-Chr5:67921590 Hepe08g0654 Hepe-Chr8:5829050 3.29e-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55675 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Hepe TF