Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1764 ATGGGGAAGAAAGTTAAGAAGAAGAACACCCGAGCTCCTCCGAAGGAGAAGAGGGTTTCTTCAAGTTCACCAATGGAGGTGCCCCAGCAAAGCAACTCGACGGTGGAGATTGCTGATGATGATGTTTCAGTTGTTAAGGAGAAAAGCCAATGCCAGCATCTTGATAAGTGCTTTAATTTGAATGAGTTATCATCTAAACTTGGGTCCTCGGATCCTATTAGCTGTGAAGATTGTCAAGAAAGTTCAGCAGATCGAAGGGGGAGTAAGGGGAAGGCTAGACATGGGAAGAAAAAGGGGGGAACTCCAGTGGATGCAAAGGCTGATTCCAAAGCAATTTGGATTTGTTTGCAGTGTGGGCATTATGCCTGTGGGGGTATTGGACTTCCAACAAACCCTCAGAGTCATGCTCTTCGGCATGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTCGGAAAGCCGCAGCTTCGATGGTGTTTCTCTTGCAATACACTTCTTCCAGTAGAGAAAACTGAAGAGAAAGGTGAACAAAAAGATGGCTTGTCTAGTGTGGTGAAACTAATTAGGGACCGGTCGATGGAAGCCGGGCCTGTGGATGTTGAGAACACATGGCGTGCAAGTAGTGATAAATCAGAAAGTTCCATATTTATTGATTTGGACAGAAAAAATCATTATGTTGTTAAAGGCTTGATTAATCTTGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGCCATTGATATGTTGAGAGATTATTTCATGAAATTGGAAGAATGTGTTGGACCTCTAACTATAGCTTTGAAGAAGATTTTTATTGAAGCAAGAATGGAAGGCAGAATGAAAGGTTCAATAAATCCAAGATCAGTTTTTGGTTGCATCTCTTCCAAAGCTCCTCAGTTCAAAGGATATGAGCAACATGATAGTCACGAATTGCTTCGTGTCCTACTTGATGGGTTGTCTACTGAAGAGCTGGCTTCGAGGAAGATGACGAAGCCTAAGGAAGAGAGAGTATCTGGAAATCCCGCTCCTACTTTTGTTGATGAGATGTTTGGGGGGCAAATATCAAGTGCCGTATGTTGCAAAGAATGTGGCCACACATCGACAGTTTACGAACCATTTCTAGATCTCTCTCTTCCTGTTCCAATGAAGAAACCTCTGGCCAAAAAGGCCCAACCAGTCTCTCGGGCAAAGAAGACAAAAGTGCCACCCAAGAGAAGTGGAAAGGGGATTCCTAAAACTGACAAGGCTTCAGATGTTGTACCAGTTCAGATTGCCTCAGTTCCATCATCTAGTAACGAGTCTTCCCTTCCATCGGAGGCCAGTGCCAGTGGCACAACTACCATCATGGAGAAAACTTCAAGTTCTCAGAATGTCTCTGATGTTAAAGAGTCTGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTACATCAGATAATTTGACATGGATGGATTTCCTTGGACCAGAAGTCAATGCAGAAAATTGTGATATTTCCCCTACTCAGGACTCTGAAAACAATGTTGAAGTATTTATCAGTGACGATTCACAACAAAGCATCTCTGGGTCGAGTATGCAGGTGTCATCCCTTCATAATGAGCCCCATCAACGACCAGATTTTTCTTCAGTGAATTCGTGGGACGATGAATCCCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTTCCTTACAAGGAAGAAAGTTCCACTGCTGAAGTAGCAAAAGAAGATGATCAAGCTTCCTCATCAATTTTGGGTTGTGCTCAAGATGATTTGGATGGCTTCGGTATTGGTGATATGTTTGATGAGCCTGAAACCTTCATAGGGCCCATTGCGAGGCCGTCCACTGCGAATGAAGTTTCAGAAAGTAGTTTTATTAGTGAGTCTGATCCTGAGGAAGTTGATAATACTGATTCTCCTGTCTCTGTGGAGAGTTGTCTAAGTTATTTCACAAAGCCAGAACTTCTGTCCAATGAAAATGGATATAACTGTGAGAAATGCTCAAAAAGACTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTCACAAAGCTGTAGCAAATGGATATCAAAATGAAGAAGCAATCAAATGTTCCAACGAGGACTCTGCAGTTGAAGACAAAAATCAAAGAAATAAGAAGTTACTAAATGGTTCCATAAGTTATAATAGTGGTGAAAACTCGAATTTGAAAGAGAATGTAGATTGTTCCAGTCGAGATTGCACAAAACCTGTCAATTGCCAAGCAGACAAGACAGATTCCTTTGTTTTGGATGAAGATAAAGCTAAGGTGGACGGAGATACGAATTCTGGGCTAGCATGTTCTTCAGGTTGTAATAACACCTGCAATCAAGAGAATTCAGGTGAAAAATCCAGTTCTTCTCTTTGCAGCGATGATCCTAAAACTAATATTGAGCCCTCGAGTTCACAAACACCTGCTGAGAACCAATCAGAAAAAGATGAGGATGGTGAGATGGATTCTGATTCGACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCTATCTTAACAATTCATTTAAAGAGGTTCAGTCCCGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCATGTCAGATTCAAGGAATCGATTGATCTTAAACCATACATGGATATCAGGTGTGCGGATAGGCACAAGTGTAGTTATCGTTTGGTCGGGGTCGTGGAGCACTCTGGATCTATGAGAGGAGGCCATTATATAGCATATGTGAGAGGGGGCAACAGGAAGAGGAGCAATGGGGAAGCTGAGGAAGATGTTTCTGTTTGGTATCATGCAAGTGATGCCAGCGTAGGCGAGGTTACCTTGGATCAGGTTCTTGGTTGCGAGGCATACATCCTATTTTATGAGATAAGATAA 2919 42.17 MGKKVKKKNTRAPPKEKRVSSSSPMEVPQQSNSTVEIADDDVSVVKEKSQCQHLDKCFNLNELSSKLGSSDPISCEDCQESSADRRGSKGKARHGKKKGGTPVDAKADSKAIWICLQCGHYACGGIGLPTNPQSHALRHVRQTRHPVVIQFGKPQLRWCFSCNTLLPVEKTEEKGEQKDGLSSVVKLIRDRSMEAGPVDVENTWRASSDKSESSIFIDLDRKNHYVVKGLINLGNTCFFNSILQNLLAIDMLRDYFMKLEECVGPLTIALKKIFIEARMEGRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLRVLLDGLSTEELASRKMTKPKEERVSGNPAPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKPLAKKAQPVSRAKKTKVPPKRSGKGIPKTDKASDVVPVQIASVPSSSNESSLPSEASASGTTTIMEKTSSSQNVSDVKESEKEVLIENGGECTSDNLTWMDFLGPEVNAENCDISPTQDSENNVEVFISDDSQQSISGSSMQVSSLHNEPHQRPDFSSVNSWDDESPLQVQASEVLLLPYKEESSTAEVAKEDDQASSSILGCAQDDLDGFGIGDMFDEPETFIGPIARPSTANEVSESSFISESDPEEVDNTDSPVSVESCLSYFTKPELLSNENGYNCEKCSKRLQQQRLEMKKQSKVAHKAVANGYQNEEAIKCSNEDSAVEDKNQRNKKLLNGSISYNSGENSNLKENVDCSSRDCTKPVNCQADKTDSFVLDEDKAKVDGDTNSGLACSSGCNNTCNQENSGEKSSSSLCSDDPKTNIEPSSSQTPAENQSEKDEDGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHLKRFSPDARGRYSKLNGHVRFKESIDLKPYMDIRCADRHKCSYRLVGVVEHSGSMRGGHYIAYVRGGNRKRSNGEAEEDVSVWYHASDASVGEVTLDQVLGCEAYILFYEIR 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 67942787 67947833 + Hsped.05g17640.1 Hepe05g1764 571029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1764 972 MobiDBLite consensus disorder prediction 1 38 - -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 520 552 - -
Hepe05g1764 972 Gene3D Cysteine proteinases 213 405 - -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 393 408 - -
Hepe05g1764 972 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270(InterPro)
Hepe05g1764 972 MobiDBLite consensus disorder prediction 707 739 - -
Hepe05g1764 972 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 29 970 IPR050185 -
Hepe05g1764 972 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 903 920 IPR018200 GO:0004843(InterPro)
Hepe05g1764 972 MobiDBLite consensus disorder prediction 720 739 - -
Hepe05g1764 972 SUPERFAMILY RING/U-box 50 165 - -
Hepe05g1764 972 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 229 244 IPR018200 GO:0004843(InterPro)
Hepe05g1764 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 186 IPR013083 -
Hepe05g1764 972 Gene3D Cysteine proteinases 617 693 - -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 795 834 - -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 22 38 - -
Hepe05g1764 972 SUPERFAMILY Cysteine proteinases 227 970 IPR038765 -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 67 104 - -
Hepe05g1764 972 FunFam Ubiquitinyl hydrolase 1 46 189 - -
Hepe05g1764 972 MobiDBLite consensus disorder prediction 795 820 - -
Hepe05g1764 972 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270(InterPro)
Hepe05g1764 972 MobiDBLite consensus disorder prediction 388 469 - -
Hepe05g1764 972 Gene3D Cysteine proteinases 697 972 - -
Hepe05g1764 972 Pfam Ubiquitin carboxyl-terminal hydrolase 229 969 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Hepe05g1764 972 MobiDBLite consensus disorder prediction 426 462 - -
Hepe05g1764 972 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 228 972 IPR028889 -
Hepe05g1764 972 Pfam Zn-finger in ubiquitin-hydrolases and other protein 108 164 IPR001607 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1764 K11844 - - csv:101204267 1602.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1764 Hepe-Chr5:67942787 Hepe06g1431 Hepe-Chr6:64751428 1.42e-18 dispersed
Hepe05g1764 Hepe-Chr5:67942787 Hepe10g1090 Hepe-Chr10:43358517 3.86e-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35