Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1784 ATGGAAGCAGCTACTGCCGGCGGTGCTGGTCCGGCACCGTTTCTCATCAAGACATACGATATGGTTGACGACTCCGCCACCGACGAGATCGTCTCCTGGACCTCTTCAAAGAAGAGCTTTGTAGTCTGGAATCCCCCTGAATTCGCTCGCCTTCTTCTTCCTACGTATTTCAAGCACAACAACTTCTCCAGCTTCATTCGGCAGCTTAATACCTATGGGTTTCGGAAGATTGATTCTGAGAGGTGGGAATTTGCAAATGAAGATTTCATAAAGGATCAAAAGCATTTGCTGAAGAACATCCACCGTCGGAAACCAATACATAGTCATAGTAATCCTCAAGGATCTCTTGTAGATCCAGAAAGAGCTGCTTTTGAAGATGAAATAGAGAGAATATCACGTGAAAAAACTACACTTGAAGCCAATATCTCAAGGTTCAAACATAAAAAATCGACTGCTAAACTTCAGTTGCAAGATCTAACGGTGAAGGTGGAAGGCATGGAAAAAAGGCAGAAGAATTTATTGGCATTTTTAGAAAAGGCTGTTCGGAACCCTTCTTTTGTAGAACATCTTGCTCGAAGAGTCGAGTCTATGGACTTTACAGCATTTAACAAAAAGAGACGACTACCTCCAGCAGCTGATCTTTCACAGCCAGTCATCGAAAATAGTTTTTTGGATAACCATAGTAGTTCCAGATCCGAGTCAGGGAATATTTTTCATCAAGATTTCTCACATAAGCTGAGATTAGAAGCTTCAAGCGTATCAGATATTAACTTAATTTCATGTAGCACCCAGAGTTCAAATGAAGAAGGGGGAACTTCACAAAGAAATATGTCCAAACTTGATACTAGAGGTGTCCAAGAAAATCTTCATTTTGCAGCTGAAACATTAGATCTCTCAGACACTGGGACATCATTTATATTGAAGAATTCATCTTTGTCAGGGAAATCGCCTAATGACGACAGTCCACGTCTGCACTCATTGCAACCAAGTGTTAGTTCCAAAGAAGATGGAGAAAGTCACATTTCCTGTCATTTAAATCTCACTCTCGCATCGTCTTCCCTACGAGTCAACGACACTGCTTGTTCACTTAGAATGCCACATCTAGGCCAGAATAATGTTAGGAAATCCCCAGATTCTAAACTCAATTCAAATGGAAAAGAATCAGATATGAGACTGTTCACTAAAAACATAAATCTCGACGAGGGAACTACTCCGTTTTGTCCCCAAGAGACCTCGAATAACAATCACAGACCTCCAGCCGCTCCTATCAGAGTCAATGATGTTTTCTGGGAACAGTTCCTTACCGAAAGACCGGGCTGTCCCGAAAGTGAAGAGGCAAGTTCTAATTACAGGGTAAATTTATACAAGGAGCCAGATGATGGGAGATCCGGCCTATCTCTTTAA 1404 41.74 MEAATAGGAGPAPFLIKTYDMVDDSATDEIVSWTSSKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDSERWEFANEDFIKDQKHLLKNIHRRKPIHSHSNPQGSLVDPERAAFEDEIERISREKTTLEANISRFKHKKSTAKLQLQDLTVKVEGMEKRQKNLLAFLEKAVRNPSFVEHLARRVESMDFTAFNKKRRLPPAADLSQPVIENSFLDNHSSSRSESGNIFHQDFSHKLRLEASSVSDINLISCSTQSSNEEGGTSQRNMSKLDTRGVQENLHFAAETLDLSDTGTSFILKNSSLSGKSPNDDSPRLHSLQPSVSSKEDGESHISCHLNLTLASSSLRVNDTACSLRMPHLGQNNVRKSPDSKLNSNGKESDMRLFTKNINLDEGTTPFCPQETSNNNHRPPAAPIRVNDVFWEQFLTERPGCPESEEASSNYRVNLYKEPDDGRSGLSL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 68134488 68137141 - Hsped.05g17840.1 Hepe05g1784 571049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1784 467 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 443 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Hepe05g1784 467 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1784 467 SMART hsfneu3 10 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1784 467 SUPERFAMILY Winged helix DNA-binding domain 10 103 IPR036390 -
Hepe05g1784 467 MobiDBLite consensus disorder prediction 309 336 - -
Hepe05g1784 467 Coils Coil 121 169 - -
Hepe05g1784 467 MobiDBLite consensus disorder prediction 309 337 - -
Hepe05g1784 467 FunFam Heat shock transcription factor 1 7 104 - -
Hepe05g1784 467 Gene3D - 8 104 IPR036388 -
Hepe05g1784 467 MobiDBLite consensus disorder prediction 439 467 - -
Hepe05g1784 467 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1784 467 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1784 467 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1784 467 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1784 K09419 - - csv:101203054 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1784 Hepe-Chr5:68134488 Hepe06g1001 Hepe-Chr6:57832923 1.97e-61 dispersed
Hepe05g1784 Hepe-Chr5:68134488 Hepe06g1976 Hepe-Chr6:70986922 1.64e-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
Hepe05g1586 . 23 237 HSF AT4G17750 53.4 5.0e-60 229.2
Hepe06g1976 . 40 243 HSF AT4G17750 54.4 2.3e-57 220.3
Hepe08g1399 . 35 235 HSF AT4G17750 51.8 1.3e-55 214.5
Hepe08g2670 . 63 250 HSF AT4G17750 51.5 3.1e-46 183.3
Hepe01g1775 . 20 118 HSF AT4G17750 70.7 8.3e-39 158.7
Hepe08g1292 . 14 115 HSF AT4G17750 67.6 9.1e-38 155.2
Hepe04g1245 . 5 170 HSF AT4G17750 51.2 3.5e-37 153.3
Hepe05g1586 . 41 241 HSF AT5G16820 56.8 1.6e-58 224.2
Hepe06g1976 . 41 247 HSF AT5G16820 54.2 5.0e-57 219.2
Hepe03g2034 . 54 264 HSF AT5G16820 56.1 1.1e-56 218.0
Hepe06g1001 . 24 517 HSF AT1G32330 54.1 3.2e-120 429.1
Hepe03g2034 . 26 260 HSF AT1G32330 50.6 7.0e-59 225.3
Hepe05g1586 . 29 237 HSF AT1G32330 51.1 1.3e-57 221.1
Hepe06g1976 . 29 227 HSF AT1G32330 52.7 2.8e-55 213.4
Hepe08g1292 . 20 120 HSF AT1G32330 68.3 6.8e-38 155.6
Hepe01g1775 . 22 117 HSF AT1G32330 71.9 2.0e-37 154.1
Hepe06g1976 . 41 262 HSF AT3G02990 53.1 1.6e-60 230.7
Hepe03g2034 . 54 269 HSF AT3G02990 54.1 4.0e-59 226.1
Hepe05g1586 . 41 240 HSF AT3G02990 55.0 3.4e-58 223.0
Hepe05g1586 . 29 236 HSF AT2G26150 54.9 6.8e-64 241.5
Hepe03g2034 . 21 259 HSF AT2G26150 52.1 4.1e-61 232.3
Hepe06g1001 . 29 243 HSF AT2G26150 58.3 7.0e-61 231.5
Hepe08g2670 . 53 275 HSF AT2G26150 50.7 1.7e-54 210.3
Hepe07g1835 . 5 150 HSF AT2G26150 53.4 5.2e-40 162.2
Hepe06g1001 . 15 220 HSF AT5G03720 52.9 3.5e-51 199.5
Hepe05g1784 . 13 209 HSF AT4G18880 50.5 3.1e-52 203.0
Hepe05g1784 . 7 464 HSF AT4G13980 52.7 1.0e-115 414.1
Hepe05g1586 . 29 216 HSF AT5G43840 55.3 2.6e-53 206.1
Hepe08g1399 . 24 227 HSF AT5G43840 50.5 1.2e-45 180.6
Hepe06g1976 . 29 346 HSF AT3G22830 51.0 1.3e-87 320.5
Hepe05g1586 . 11 241 HSF AT3G22830 61.2 4.6e-80 295.4
Hepe06g1001 . 31 242 HSF AT3G22830 59.0 5.2e-63 238.8
Hepe08g1399 . 24 233 HSF AT3G22830 54.5 5.7e-62 235.3
Hepe08g2670 . 53 253 HSF AT3G22830 50.2 8.5e-50 194.9
Hepe06g1976 . 29 323 HSF AT3G51910 52.3 8.5e-70 260.8
Hepe03g2034 . 38 260 HSF AT3G51910 58.9 3.1e-64 242.3
Hepe05g1586 . 29 237 HSF AT3G51910 57.3 2.1e-60 229.6
Hepe08g1399 . 24 240 HSF AT3G51910 50.7 1.6e-52 203.4
Hepe08g1399 . 24 223 HSF AT3G63350 52.5 1.9e-48 189.9
Hepe08g1292 . 17 117 HSF AT5G62020 68.3 5.9e-40 161.8
Hepe01g1775 . 16 119 HSF AT4G11660 73.1 2.2e-44 176.8
Hepe08g1292 . 16 121 HSF AT4G11660 69.8 1.1e-43 174.5
Hepe04g1245 . 2 100 HSF AT4G11660 70.7 4.4e-40 162.5
Hepe05g0801 . 22 120 HSF AT4G11660 68.7 2.0e-37 153.7
Hepe09g1181 . 11 108 HSF AT4G11660 67.3 3.5e-37 152.9
Hepe06g1001 . 33 126 HSF AT4G11660 69.1 1.3e-36 151.0
Hepe05g0801 . 19 223 HSF AT2G41690 54.3 7.9e-51 197.6
Hepe04g0401 . 27 215 HSF AT2G41690 55.6 9.1e-47 184.1
Hepe01g1775 . 1 343 HSF AT1G46264 50.7 1.0e-88 323.9
Hepe09g1181 . 12 198 HSF AT1G46264 57.5 2.5e-58 223.0
Hepe06g1001 . 33 136 HSF AT1G46264 73.1 8.1e-41 164.9
Hepe05g1784 . 7 104 HSF AT1G46264 71.4 4.2e-37 152.5
Hepe09g0754 . 11 183 HSF AT3G24520 71.1 5.7e-68 255.0
Hepe08g2589 . 48 218 HSF AT3G24520 62.6 3.7e-59 225.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55676 PF00447 HSF_DNA-bind 5.40E-31 CL0123 Hepe TF