Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1854 ATGGCAGCAATTCAAAGCTTTTCAATCCTTCTTCTTATTCTTCTTGTTTTTCCAACCGTCATCTTTTCCTATTCTGAAACTGAAATAAAAAATTGGTGTAGCCAAACGCCATATCCATCCCCATGTGAGCACTTTCTCAAAGCCAAAGCCGCCACCAAACATTCCCCAATCACCACAAAATCTCACTTCCTCAAAATCTTAGTCGAAACGGCACTCGAGCGTGCCGTTTCCGCCCACGAAAACGCCATCTCTCTCGGTCCAAAGTGTCGAAATGCCCTAGAAAAATCTGCATGGGCCGACTGCGTCGACCTCTACGACCAAATCATAACCCGACTCAATCGAACCACCGACCGCTGCTCCTCGGTCGACGCACAAACTTGGCTGAGCGCTTCCCTCACCGCCCTCGAGACCTGCCGAACCGGGTTCGAGGAGCTCGGGGTGTCGGGTTTCGGCTATCCCTTGACGGCCAATAATGTTTCTAAGCTGATTAGTGATGGGTTGTCGGTGAATAAGCCAGCATCGCACGAGGCGTTTGATCCGCCGAGCATGGCGGAAGGGTTTCCGACGTGGGTTAGGCCCGGCGACCGAAAGTTGCTGCAGTCCGGGTCTCCAAAAGCGAATGTCGTGGTGGCGACCGACGGGTCAGGGAATTTTAAGACGGTGAAGGAGGCGGTCGCCGCTGCAAAGGGCGGCGGGAGATTTGTGATTTATGTGAAGGCGGGAGTTTATAGTGAGAATGTTGAGATTAATACTAAGAATGTTATGTTGTTCGGCGACGGTATCGGAAAAACTGTCATCACCGGAAGTAGAAGCGTCGGCGGAGGTTCCACCACTTTTAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACCTTCAGAAACACCGCCGGAGCTAAAAACCACCAAGCGGTGGCGCTCCGATCAGGCTCCGACCTCTCCGTCTTCTACCGCTGCGGCTTCGAAGGCTATCAAGACACTCTCTACGTCTACGCCGAACGCCAATTCTACAAAGAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGCGATCCTCCGAATAAAACCATCACGCTCACCGCCCAAGGCCGCTCAGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAGTCACGGCTGGCGGCGGCCTCAGCGGCGTCAAGGCGTATTTAGGGCGGCCGTGGAGGCAGTATTCCAGAACCGTGTTCATGAAAACATCGATCGGAGGATTTATCAGTCCGGCGGGGTGGATGGAATGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATTCTGGACCGGGATCTTCGACGGCGAATCGAGTGACATGGAAGGGTTACCATGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.4 MAAIQSFSILLLILLVFPTVIFSYSETEIKNWCSQTPYPSPCEHFLKAKAATKHSPITTKSHFLKILVETALERAVSAHENAISLGPKCRNALEKSAWADCVDLYDQIITRLNRTTDRCSSVDAQTWLSASLTALETCRTGFEELGVSGFGYPLTANNVSKLISDGLSVNKPASHEAFDPPSMAEGFPTWVRPGDRKLLQSGSPKANVVVATDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENVEINTKNVMLFGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKECDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRVTAGGGLSGVKAYLGRPWRQYSRTVFMKTSIGGFISPAGWMEWSGNFALNTLYYGEYMNSGPGSSTANRVTWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 68844978 68849816 - Hsped.05g18540.1 Hepe05g1854 571119
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1854 509 SMART PMEI_2 24 169 IPR006501 GO:0004857(InterPro)
Hepe05g1854 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Hepe05g1854 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Hepe05g1854 509 NCBIfam pectinesterase inhibitor domain 7 147 IPR006501 GO:0004857(InterPro)
Hepe05g1854 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 170 IPR035513 -
Hepe05g1854 509 Gene3D - 202 509 IPR012334 -
Hepe05g1854 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g1854 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Hepe05g1854 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857(InterPro)
Hepe05g1854 509 CDD PMEI-like_3 32 174 - -
Hepe05g1854 509 PANTHER PECTINESTERASE 3 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1854 509 FunFam Pectinesterase 201 509 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1854 Hepe-Chr5:68844978 Hepe06g1367 Hepe-Chr6:63939918 2.57e-202 dispersed
Hepe05g1854 Hepe-Chr5:68844978 Hepe05g1855 Hepe-Chr5:68864463 3.22e-115 tandem
Hepe05g1854 Hepe-Chr5:68844978 Hepe07g0246 Hepe-Chr7:2340813 1.37e-201 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1854 K01051 - csv:101217552 883.634