Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1855 ATGTATTTAGTTAAAAATTTCTCATCCCACCCACTAACACTTGGCTACACCCACACCCACGTGTTTCGCACACCATCCTATATATCAATTTCTCACATACACATCCTATTTACATTTAAAAATCAAAATCCTCTTCTTTCTCATCATATAATTACCAAAATGCCCTTTCCCTTCGCTGCCTTTCTTCTCCTCTTCTTGGCCATCGTTGTTTCCTCTATTTCTTCGTTTGACGATCTGAACCCGGTTCGGTTGGTACGGACCGGAGTTATGGATGCCAGAACCGGAATAGGTGATTTAAAACGACGGAATGTTCATGCCGCCGCCGCACTTGCCGATTGTGCTACGCTTTACGAGGAGGCCGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGATGATGCTCGGATGTGGCTCAGCGCCGCCGTGGCTAATCATCGCAGTTGTTTGGATGGCTTGGAAGAGGTCGGCGTTGCGGCGGCGGTGGATGGGAATAAGTTGACCGGATTGCTCACCGGAGCTCTGCATTTCTACGACAAGATTTCTTCCGTGGAGGAGCGGAATGGTGTAGATGAAGAGAAACGGAGGAAAAAGAGAAGAATCATCAACTTGGCAAAATGGAATCCGGCGAGGTCGAAACCCGACTATGTGGTGGCGATGGACGGCTCCGGCACCCACGCAAACATAACCGGCGCGGTGGCGGCTCTGGCGAGGACTGGCCGGAGACGACGGCCAGAGAGAGTGGTGATATACGTGAAAGCCGGAGTTTACAAGGAGAATGTGGAAATTGGGGTGCAGTTGAAGAACATCATGATTGTCGGCGACGGCGCTCACAAAACCATTGTCACCGGTAGCCGCAACGTGCCGGACGGCGCCACCACTTATAACTCAGCTACATTTGGCGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACATTCGAGAACACGGCCGGACCGGAAAAGCAACAAGCGGTGGCGCTACGACTGAATTCCGACCTCGCCGTCATATACCGGTGCACAATCAAAGGCTATCAGGACACCCTCTTCCTTCACTCCCTCCGCCAATTCTACCGTGATTGCCATATCTACGGCACCATCGATTTCATCTTCGGGAACTCCGCCGCAGTCCTCCAAAACTGCGACATCTTCGTCCGACGGCCGATCCCCCACCAGGCCAACATGATCACCGCCCAAAGCCGCGACAATCCGGCCGAGGCCACCGGAATTTCGATCCATAATTCCAGAGTCCGTCCTGCGCCGGATTTCGCCGCCGTCAAGGGCGATTTCAAAACCTACCTCGGGCGGCCGTGGAAGCGATTCTCGAGGACGGTGGTTATTGCGACGGATTTGGACGGATTGATCGATCCGAGAGGGTGGGGAGAATGGGAAGGGGATTTTGCGATTTCGACTCTATTTTATGCAGAGTTTAACAACACTGGCGGTGGTTCTTCCACCAAATTTAGGGTTAATTGGCCGGGATTTCACGTCCTCCGTACCGCCGAACAGGCCCGAAGTTTCACGGTGGTTGAGTTTCTCCACGGCGGCGCTTGGATTTCGGCATCCGGCATTCCCTTTGAGGCGGGAGTTTGA 1602 53.31 MYLVKNFSSHPLTLGYTHTHVFRTPSYISISHIHILFTFKNQNPLLSHHIITKMPFPFAAFLLLFLAIVVSSISSFDDLNPVRLVRTGVMDARTGIGDLKRRNVHAAAALADCATLYEEADWRLAGMLVGENYTADDARMWLSAAVANHRSCLDGLEEVGVAAAVDGNKLTGLLTGALHFYDKISSVEERNGVDEEKRRKKRRIINLAKWNPARSKPDYVVAMDGSGTHANITGAVAALARTGRRRRPERVVIYVKAGVYKENVEIGVQLKNIMIVGDGAHKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVIYRCTIKGYQDTLFLHSLRQFYRDCHIYGTIDFIFGNSAAVLQNCDIFVRRPIPHQANMITAQSRDNPAEATGISIHNSRVRPAPDFAAVKGDFKTYLGRPWKRFSRTVVIATDLDGLIDPRGWGEWEGDFAISTLFYAEFNNTGGGSSTKFRVNWPGFHVLRTAEQARSFTVVEFLHGGAWISASGIPFEAGV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 68864463 68868712 + Hsped.05g18550.1 Hepe05g1855 571120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1855 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 184 IPR035513 -
Hepe05g1855 533 Gene3D - 212 533 IPR012334 -
Hepe05g1855 533 FunFam Pectinesterase 212 533 - -
Hepe05g1855 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 84 162 IPR035513 -
Hepe05g1855 533 Pfam Plant invertase/pectin methylesterase inhibitor 98 164 IPR006501 GO:0004857(InterPro)
Hepe05g1855 533 SUPERFAMILY Pectin lyase-like 215 531 IPR011050 -
Hepe05g1855 533 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Hepe05g1855 533 PANTHER PECTINESTERASE 103 523 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe05g1855 533 Pfam Pectinesterase 219 518 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1855 Hepe-Chr5:68864463 Hepe06g1367 Hepe-Chr6:63939918 7.97e-129 dispersed
Hepe05g1854 Hepe-Chr5:68844978 Hepe05g1855 Hepe-Chr5:68864463 3.22e-115 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1855 K01051 - csv:101217635 707.983