Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1875 ATGGAAGAGAGAGAAGCTATAAGTTCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACTGATAACCCGCCGCCGGTCAGCAGCGGCGGTTCGCCCACCGTTGCCGCCTCGCCGGTCAGTGTGGGGCTCCCCGGAAGTGGAACCACAGGGAAAAAGAAGAGGGGTAGACCTAGAAAGTACGGCCCAGATGGAACGGTCACCATGGCATTGTCGCCATTGCCGCTTTCTTCATCAGCTCCGGCCGCCGGCGGCTTCTCCATCACCAAGCGGGGGAAGGGCCGGCTCGGCGGCGGAGGCGGGTCCGAGTTCAAGCATCACAAGAAAATGGGAATGGAATATATAGGCGAATGGAATCCGTGTAATGTCGGTACAAATTTCATGCCTCATATCATAGCAGTCAGTGCTGGCGAGGATGTCACTATGAAGATCATCTCATTTTCCCAACAAGGTCCTCGAGCAATCTGCATTCTTTCTGCAAATGGAGTAATTTCAAATGTCACACTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACGTATGAGGGTCGATTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACGAGAAGCAGATCAGGTGGGATGAGCGTCTCCTTGGCAAGCCCCGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAGCAGAAAGTAAAGAAACAGAGGCCCGAGTCGGTACCAACTGCAGCTCCGAGCACAACACCAGCCACCAATGTGCCAACCTCGAATACCGATACAGACGACAGTTTAAATGGTAATGGCCTGCAAAATCCTGGGTCCCTAAAACCAACTACTTTCGCTCCTTCGGCTTTCCAGAGAGACAATTGGGGTGCCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATATCGCTGCCAGGCTAA 1029 52.77 MEEREAISSGVTVIGAEAPSAYHVAPRTDNPPPVSSGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGGGGSEFKHHKKMGMEYIGEWNPCNVGTNFMPHIIAVSAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQRPESVPTAAPSTTPATNVPTSNTDTDDSLNGNGLQNPGSLKPTTFAPSAFQRDNWGANAAVHSLQEPRNSATDINISLPG 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69037876 69042742 - Hsped.05g18750.1 Hepe05g1875 571140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1875 342 MobiDBLite consensus disorder prediction 22 72 - -
Hepe05g1875 342 FunFam AT-hook motif nuclear-localized protein 1-like 136 266 - -
Hepe05g1875 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Hepe05g1875 342 Gene3D - 136 265 - -
Hepe05g1875 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 255 - -
Hepe05g1875 342 CDD DUF296 136 249 IPR005175 -
Hepe05g1875 342 ProSiteProfiles PPC domain profile profile. 131 277 IPR005175 -
Hepe05g1875 342 MobiDBLite consensus disorder prediction 325 342 - -
Hepe05g1875 342 MobiDBLite consensus disorder prediction 253 342 - -
Hepe05g1875 342 MobiDBLite consensus disorder prediction 267 313 - -
Hepe05g1875 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 292 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1875 Hepe-Chr5:69037876 Hepe06g1625 Hepe-Chr6:67129009 1.44e-111 dispersed
Hepe05g1875 Hepe-Chr5:69037876 Hepe05g1880 Hepe-Chr5:69130990 1.18e-20 proximal
Hepe05g1875 Hepe-Chr5:69037876 Hepe06g1622 Hepe-Chr6:67068574 7.21e-22 wgd
Hepe05g1875 Hepe-Chr5:69037876 Hepe07g0228 Hepe-Chr7:2171780 3.56e-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1875 - - - 0.0