Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1877 ATGAGCTCGAGGCGCAACGACGGAGGTTGCACGGGAGGCAATGGTGGCAGCGGACCGTGCGGGGCGTGCAAGTTTCTTAGGAGGAAGTGTCTGCCTGGGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGCACAGCTCATTTTGCGGCCGTGCACAAGGTGTTTGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATACCTGAACACAAACGACTTGACGCTGCTATAACCATATGCTACGAGGCGCAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCTCTTCAACAACAGGCTGCGATGTTGCGAGCAGAGCTCTCGTACTTGCAAGCATACCTAGCAACATCTCATGCACAGCCACCAGCTCTGGTCAAGCCATCTATACCCTCAATTGTAAACCTTCCATCAGATTGCCCAGCCGCGTTAGATTTTTCGCTTCTTCTCGATCCTGTGGAGCAAGCTTCAGCAAAATTGCAGTCTCCATTGGAACTGTGTCCAATTGGAAGCAACAATTTCCCATCCATGGGTAGCAGGGATCAACAACTTGTCCAAAAACAACTGTCGTCAATGCAATACATTGGTGCCTCGCTATTTCCGTACCTCCCTAAACGAGCCTAA 639 50.23 MSSRRNDGGCTGGNGGSGPCGACKFLRRKCLPGCIFAPYFDSEQGTAHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAAMLRAELSYLQAYLATSHAQPPALVKPSIPSIVNLPSDCPAALDFSLLLDPVEQASAKLQSPLELCPIGSNNFPSMGSRDQQLVQKQLSSMQYIGASLFPYLPKRA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69076213 69077080 + Hsped.05g18770.1 Hepe05g1877 571142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1877 212 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Hepe05g1877 212 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Hepe05g1877 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 132 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0462 Hepe-Chr3:7030470 Hepe05g1877 Hepe-Chr5:69076213 5.08e-65 dispersed
Hepe05g1877 Hepe-Chr5:69076213 Hepe06g1936 Hepe-Chr6:70591110 1.01e-47 dispersed
Hepe01g0778 Hepe-Chr1:71310361 Hepe05g1877 Hepe-Chr5:69076213 3.64e-42 transposed
Hepe03g2103 Hepe-Chr3:79041611 Hepe05g1877 Hepe-Chr5:69076213 2.41e-45 transposed
Hepe03g0460 Hepe-Chr3:6986410 Hepe05g1877 Hepe-Chr5:69076213 2.34e-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55680 PF03195 LOB 2.50E-36 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1877 K21994 - csv:101216934 320.472