Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1880 ATGGATCGAGCCACCGCCGCCCATGGCCGCCCACTTCCACCGCCGTTCATTTCAAGAGACCTCCATCTAATTCCCCACCACCATTTTCTCCACCAAAACTCCGATCAACAACACAACGGAAATGGCAGCTCCGTCGGCGGCGCCGCCGTGGAACCTAAAGAGCTAAGCGGCGGTAGCTCCGCAGACGGCGAGGCCTCGAGACGGCCACGTGGCCGCCCGGCCGGATCGAAGAACAAGCCGAAGCCGCCGATGATAATAACACGTGACAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAACGACGTGATCGAAACCCTCACGATTTTCGCACGTCAGCGCCAGCGTGGCATTTGCATTCTGACCGGCGCCGGAGCGGTTAGCAACGTCACCCTCAAGCAGCCGGCCTCCCCCGCCGGAGCGGTGATCTCTCTGCCGGGGAGATTCGAGATTCTGTCGCTGTCGGGGTCGTTTCTGCCGCCGCCGGCTCCACCAGCAGCGTCCGGGCTGACCGTGTATTTGTCGGGCGGTCAGGGGCAGGTGGTCGGAGGAAGCGTGGTGGGTCCACTCTTGAGTTCGGGGCCGGTGGTGATCACGGCGGCTTCGTTCGGAAACGCGGCGTACGAAAGGCTGCCAGTGGAGGATGATGACGGAGAGGCGGCGACAGCGGTGGAAGCCAGCAATAGTCCGCTTAGGTCACCGGAAACTGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGAATGACGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTCCGCCCTTTTAG 837 61.53 MDRATAAHGRPLPPPFISRDLHLIPHHHFLHQNSDQQHNGNGSSVGGAAVEPKELSGGSSADGEASRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICILTGAGAVSNVTLKQPASPAGAVISLPGRFEILSLSGSFLPPPAPPAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDGEAATAVEASNSPLRSPETAVQQQQFLPELHGMTPHLMNTCQLPTEPYWGTGRTPPF 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 69130990 69131826 + Hsped.05g18800.1 Hepe05g1880 571145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1880 278 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Hepe05g1880 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Hepe05g1880 278 FunFam AT-hook motif nuclear-localized protein 94 223 - -
Hepe05g1880 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Hepe05g1880 278 Gene3D - 94 224 - -
Hepe05g1880 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 237 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Hepe05g1880 278 MobiDBLite consensus disorder prediction 32 85 - -
Hepe05g1880 278 CDD DUF296 95 163 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0464 Hepe-Chr3:7115765 Hepe05g1880 Hepe-Chr5:69130990 1.62e-87 dispersed
Hepe05g1880 Hepe-Chr5:69130990 Hepe06g1622 Hepe-Chr6:67068574 1.17e-84 dispersed
Hepe05g1875 Hepe-Chr5:69037876 Hepe05g1880 Hepe-Chr5:69130990 1.18e-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1880 - - - 0.0